DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gl and Zfp113

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:XP_008767294.1 Gene:Zfp113 / 100912096 RGDID:6489147 Length:446 Species:Rattus norvegicus


Alignment Length:242 Identity:89/242 - (36%)
Similarity:125/242 - (51%) Gaps:38/242 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 NSSLAGYYPTGVGNQGYTPPHKSPTSYQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLC 439
            ||.|..:....:|::    |||.....::.             :...||...:....|| ||..|
  Rat   185 NSKLTSHQRLPMGDR----PHKCDECSKSF-------------NRTSDLIQHQRIHTGE-KPYEC 231

  Fly   440 RLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQ 504
            ..|||.:::.:.|..|.|.|:||:||.|.||.|:||.::.|..|.|.|||:||:.|..|.:.||.
  Rat   232 SECGKAFSQSAHLIQHQRIHTGEKPYECKDCGKTFSCSSALILHQRIHTGEKPYECNECGKTFSW 296

  Fly   505 SSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMR 569
            ||::|.|.|.|:||:||.|:.|.|:||.||||..|.|||:|||||:|..|...||||.:|.:|.|
  Rat   297 SSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECNECGKAFSQSSHLYQHQR 361

  Fly   570 VHGNNNSSNGSNGATG--------VGGESSTGSGVGGGNSLLTXQKP 608
            :|            ||        .||:.:..||:.....:.|.:.|
  Rat   362 IH------------TGEKPYECMECGGKFTYSSGLIQHQRIHTGENP 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 7/19 (37%)
zf-C2H2 439..459 CDD:278523 7/19 (37%)
zf-H2C2_2 452..476 CDD:290200 13/23 (57%)
C2H2 Zn finger 467..487 CDD:275368 9/19 (47%)
zf-H2C2_2 479..504 CDD:290200 11/24 (46%)
zf-C2H2_8 492..570 CDD:292531 41/77 (53%)
C2H2 Zn finger 495..515 CDD:275368 9/19 (47%)
zf-H2C2_2 507..531 CDD:290200 11/23 (48%)
C2H2 Zn finger 523..543 CDD:275368 11/19 (58%)
zf-H2C2_2 536..560 CDD:290200 13/23 (57%)
C2H2 Zn finger 551..571 CDD:275368 9/19 (47%)
Zfp113XP_008767294.1 KRAB 52..>92 CDD:214630
KRAB 52..91 CDD:279668
COG5048 <183..354 CDD:227381 76/186 (41%)
zf-C2H2 201..223 CDD:278523 4/34 (12%)
C2H2 Zn finger 203..223 CDD:275368 2/32 (6%)
zf-H2C2_2 215..240 CDD:290200 10/25 (40%)
C2H2 Zn finger 231..251 CDD:275368 7/19 (37%)
zf-H2C2_2 243..268 CDD:290200 13/24 (54%)
C2H2 Zn finger 259..279 CDD:275368 9/19 (47%)
zf-H2C2_2 275..295 CDD:290200 9/19 (47%)
C2H2 Zn finger 287..307 CDD:275368 9/19 (47%)
zf-H2C2_2 300..324 CDD:290200 12/23 (52%)
C2H2 Zn finger 315..335 CDD:275368 11/19 (58%)
zf-H2C2_2 331..352 CDD:290200 12/20 (60%)
C2H2 Zn finger 343..363 CDD:275368 9/19 (47%)
zf-H2C2_2 355..380 CDD:290200 8/36 (22%)
COG5048 367..>424 CDD:227381 6/30 (20%)
C2H2 Zn finger 371..391 CDD:275368 4/19 (21%)
zf-H2C2_2 384..408 CDD:290200 2/13 (15%)
C2H2 Zn finger 399..419 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.