DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gl and znf665

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001165008.1 Gene:znf665 / 100328608 XenbaseID:XB-GENE-6050027 Length:403 Species:Xenopus tropicalis


Alignment Length:140 Identity:62/140 - (44%)
Similarity:83/140 - (59%) Gaps:1/140 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 GEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCP 496
            || ||.:|..|||::.:..:|..|...|:||:|:.|.:|.|||.|...||||...|||:|||.|.
 Frog    68 GE-KPFMCTECGKSFRKKQSLTAHQLIHTGEKPFMCTECGKSFRQKHQLTAHQLIHTGEKPFMCT 131

  Fly   497 ICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQS 561
            .|.:.|.|...:|.|...|.||:|:.|:.|.|||.....||:|..||:|||||.|..|..:|.:.
 Frog   132 ECGKSFRQKHRLTAHQLIHMGEKPFMCTECGKSFRQKQLLTQHQLIHTGEKPYACTECDKQFHKR 196

  Fly   562 GNLNRHMRVH 571
            .:|..|.|:|
 Frog   197 RSLLSHQRIH 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 6/19 (32%)
zf-C2H2 439..459 CDD:278523 6/19 (32%)
zf-H2C2_2 452..476 CDD:290200 11/23 (48%)
C2H2 Zn finger 467..487 CDD:275368 10/19 (53%)
zf-H2C2_2 479..504 CDD:290200 13/24 (54%)
zf-C2H2_8 492..570 CDD:292531 32/77 (42%)
C2H2 Zn finger 495..515 CDD:275368 6/19 (32%)
zf-H2C2_2 507..531 CDD:290200 10/23 (43%)
C2H2 Zn finger 523..543 CDD:275368 8/19 (42%)
zf-H2C2_2 536..560 CDD:290200 13/23 (57%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
znf665NP_001165008.1 COG5048 15..392 CDD:227381 62/140 (44%)
C2H2 Zn finger 18..38 CDD:275368
C2H2 Zn finger 46..66 CDD:275368
C2H2 Zn finger 74..94 CDD:275368 6/19 (32%)
C2H2 Zn finger 102..122 CDD:275368 10/19 (53%)
C2H2 Zn finger 130..150 CDD:275368 6/19 (32%)
C2H2 Zn finger 158..178 CDD:275368 8/19 (42%)
C2H2 Zn finger 186..206 CDD:275368 6/19 (32%)
zf-H2C2_2 198..223 CDD:290200 4/9 (44%)
C2H2 Zn finger 214..234 CDD:275368
C2H2 Zn finger 242..262 CDD:275368
C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 298..318 CDD:275368
C2H2 Zn finger 326..346 CDD:275368
C2H2 Zn finger 354..374 CDD:275368
C2H2 Zn finger 382..402 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.