DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup43 and Nup43

DIOPT Version :9

Sequence 1:NP_650716.2 Gene:Nup43 / 42209 FlyBaseID:FBgn0038609 Length:358 Species:Drosophila melanogaster
Sequence 2:XP_006227684.1 Gene:Nup43 / 683983 RGDID:1596513 Length:378 Species:Rattus norvegicus


Alignment Length:373 Identity:104/373 - (27%)
Similarity:182/373 - (48%) Gaps:37/373 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 YISEKVSQVRWLP---EELQQSERFVTGSWDMDQNFVRLWRLQSNQYVTATDSEVDQIPRCMDKV 71
            ::|:|:|:.||.|   ..||.:|.|.|||||.::|.|.||.:.....:. :|...:...:.:..:
  Rat     8 FVSQKISKTRWRPVPSGSLQTTETFATGSWDNEENCVSLWSIGEFGNLD-SDGGFEGDHQLLCDI 71

  Fly    72 RMEDDVTAMEFVDKDTLAVSCADGHLSVFNVHRAVEEDQMQRTSRSGRLHC--FQRSQEPAPCTD 134
            |...||..::|.|::.:..:.:.|.::||..|...:...:.:...:...|.  ...|...||||.
  Rat    72 RHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVSQQWPTAHYHTGPGSPSYSSAPCTG 136

  Fly   135 LSVYGTDIATAGEDGCVSIVSVENVRQVKRQIEADSMALFSICYISQQELVTANRMGVIRMLDAR 199
            :.....:|.|.||||.:::..|::...|:....|||..|.::.::...|:||.|.:|.:::.|.|
  Rat   137 IVCDNPEIVTVGEDGRINLFRVDHKEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQLKIWDFR 201

  Fly   200 VATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVWDMRNLSYPASYLSAHKS 264
                .|......:.|.......:..:.:||.|||::..|.::|.:::||:|..:.|.|.|.||::
  Rat   202 ----QQGSEPCQILSLTGDRVPLHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEA 262

  Fly   265 PINEIGFHQKDPSKLFTAAEGGEVWMWS------ENKVLGCDYNKDGH----------------- 306
            .:.|:.||..:|..|||.:|.|.:|.|.      |...|   :::.|.                 
  Rat   263 EMWEVHFHPSNPDHLFTCSEDGSLWHWDASTNAPEKSSL---FHQGGRSTFLSHSSNQASVHLSL 324

  Fly   307 -SPWLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEAVYL 353
             |.|||.|..:..:::..:|.:...|:||.||.|..||||.|.|::|:
  Rat   325 VSSWLSTDPAKDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAESIYV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup43NP_650716.2 WD40 repeat 16..73 CDD:293791 18/59 (31%)
WD40 74..347 CDD:295369 80/298 (27%)
WD40 repeat 77..125 CDD:293791 8/49 (16%)
WD40 repeat 133..166 CDD:293791 9/32 (28%)
WD40 <142..344 CDD:225201 63/225 (28%)
WD40 repeat 173..211 CDD:293791 9/37 (24%)
WD40 repeat 222..263 CDD:293791 14/40 (35%)
WD40 repeat 266..291 CDD:293791 10/24 (42%)
Nup43XP_006227684.1 WD40 73..>293 CDD:421866 62/227 (27%)
WD40 repeat 78..120 CDD:293791 6/41 (15%)
WD40 repeat 125..168 CDD:293791 13/42 (31%)
WD40 repeat 175..212 CDD:293791 8/36 (22%)
WD40 repeat 220..258 CDD:293791 12/37 (32%)
WD40 repeat 266..303 CDD:293791 13/42 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346767
Domainoid 1 1.000 167 1.000 Domainoid score I3751
eggNOG 1 0.900 - - E1_KOG4714
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11639
Inparanoid 1 1.050 168 1.000 Inparanoid score I4065
OMA 1 1.010 - - QHG59409
OrthoDB 1 1.010 - - D311838at33208
OrthoFinder 1 1.000 - - FOG0007248
OrthoInspector 1 1.000 - - oto96552
orthoMCL 1 0.900 - - OOG6_106008
Panther 1 1.100 - - LDO PTHR22652
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X7163
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

Return to query results.
Submit another query.