Sequence 1: | NP_650716.2 | Gene: | Nup43 / 42209 | FlyBaseID: | FBgn0038609 | Length: | 358 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006227684.1 | Gene: | Nup43 / 683983 | RGDID: | 1596513 | Length: | 378 | Species: | Rattus norvegicus |
Alignment Length: | 373 | Identity: | 104/373 - (27%) |
---|---|---|---|
Similarity: | 182/373 - (48%) | Gaps: | 37/373 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 YISEKVSQVRWLP---EELQQSERFVTGSWDMDQNFVRLWRLQSNQYVTATDSEVDQIPRCMDKV 71
Fly 72 RMEDDVTAMEFVDKDTLAVSCADGHLSVFNVHRAVEEDQMQRTSRSGRLHC--FQRSQEPAPCTD 134
Fly 135 LSVYGTDIATAGEDGCVSIVSVENVRQVKRQIEADSMALFSICYISQQELVTANRMGVIRMLDAR 199
Fly 200 VATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVWDMRNLSYPASYLSAHKS 264
Fly 265 PINEIGFHQKDPSKLFTAAEGGEVWMWS------ENKVLGCDYNKDGH----------------- 306
Fly 307 -SPWLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEAVYL 353 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nup43 | NP_650716.2 | WD40 repeat | 16..73 | CDD:293791 | 18/59 (31%) |
WD40 | 74..347 | CDD:295369 | 80/298 (27%) | ||
WD40 repeat | 77..125 | CDD:293791 | 8/49 (16%) | ||
WD40 repeat | 133..166 | CDD:293791 | 9/32 (28%) | ||
WD40 | <142..344 | CDD:225201 | 63/225 (28%) | ||
WD40 repeat | 173..211 | CDD:293791 | 9/37 (24%) | ||
WD40 repeat | 222..263 | CDD:293791 | 14/40 (35%) | ||
WD40 repeat | 266..291 | CDD:293791 | 10/24 (42%) | ||
Nup43 | XP_006227684.1 | WD40 | 73..>293 | CDD:421866 | 62/227 (27%) |
WD40 repeat | 78..120 | CDD:293791 | 6/41 (15%) | ||
WD40 repeat | 125..168 | CDD:293791 | 13/42 (31%) | ||
WD40 repeat | 175..212 | CDD:293791 | 8/36 (22%) | ||
WD40 repeat | 220..258 | CDD:293791 | 12/37 (32%) | ||
WD40 repeat | 266..303 | CDD:293791 | 13/42 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166346767 | |
Domainoid | 1 | 1.000 | 167 | 1.000 | Domainoid score | I3751 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4714 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H11639 | |
Inparanoid | 1 | 1.050 | 168 | 1.000 | Inparanoid score | I4065 |
OMA | 1 | 1.010 | - | - | QHG59409 | |
OrthoDB | 1 | 1.010 | - | - | D311838at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0007248 | |
OrthoInspector | 1 | 1.000 | - | - | oto96552 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_106008 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR22652 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X7163 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
15 | 14.810 |