DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup43 and nup43

DIOPT Version :9

Sequence 1:NP_650716.2 Gene:Nup43 / 42209 FlyBaseID:FBgn0038609 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_001016144.1 Gene:nup43 / 548898 XenbaseID:XB-GENE-1017294 Length:375 Species:Xenopus tropicalis


Alignment Length:370 Identity:109/370 - (29%)
Similarity:185/370 - (50%) Gaps:35/370 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 YISEKVSQVRWLP---EELQQSERFVTGSWDMDQNFVRLWRLQSNQYVTATDSEVDQIPRCMDKV 71
            ::|.|:|:.||.|   ..|||.:.|.|||||.::|.|.:| ..|:....:.:.|....|:.:..:
 Frog     9 FVSHKISRTRWRPVSASSLQQPDVFATGSWDNEENKVCVW-ATSDFGAISLEEEYQGDPKQLCDI 72

  Fly    72 RMEDDVTAMEFVDKDTLAVSCADGHLSVFNVHRAVEEDQ-MQRTSRSGRLHCFQRSQEPAPCTDL 135
            |...||..|:|:|::.:..:.:.|.:::|..|   |.:| :....:..:.|....|...||||.:
 Frog    73 RHIGDVMDMQFLDQERIVTASSTGTVTIFRHH---ENNQTLSVNQKWEQAHYHVGSNMRAPCTGI 134

  Fly   136 SVYGTDIATAGEDGCVSIVSVENVRQVKRQI-EADSMALFSICYISQQELVTANRMGVIRMLDAR 199
            .....:|.:.||||.::....|: |.|.|.| :|||..:..:.::...|::|.|.:|.:::.|.|
 Frog   135 VCSSPEIVSVGEDGRINCFRAES-RDVVRTIDDADSSTMHGVTFLRTTEILTVNSVGQLKLWDLR 198

  Fly   200 VATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVWDMRNLSYPASYLSAHKS 264
            .... .|...|.|..:....:.|.   :||.|||::..|.::|.:.:||:|:...|.|.|:|||:
 Frog   199 KQGN-DPTQIFSVTGERVPLHCVD---RHPNQQHVVATGGQDGMLCIWDVRHGKMPMSLLNAHKA 259

  Fly   265 PINEIGFHQKDPSKLFTAAEGGEVWMW---------------------SENKVLGCDYNKDGHSP 308
            .:.|:.||..:|..|||.:|.|.:|.|                     |.:.:...:.|:.....
 Frog   260 EMWEVHFHPSNPDHLFTCSEDGSLWHWDASADTEKPTFIIGGRSTFNISRSSIAHTNANQSLACV 324

  Fly   309 WLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEAVYL 353
            |||.|..:..:::..:|.:...|:||.||.|..||||.|.||:|:
 Frog   325 WLSTDPTKGHLEITNLLPSSTLSVNSLDVLGQNLVCGTDAEAIYV 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup43NP_650716.2 WD40 repeat 16..73 CDD:293791 19/59 (32%)
WD40 74..347 CDD:295369 83/295 (28%)
WD40 repeat 77..125 CDD:293791 10/48 (21%)
WD40 repeat 133..166 CDD:293791 10/32 (31%)
WD40 <142..344 CDD:225201 64/223 (29%)
WD40 repeat 173..211 CDD:293791 7/37 (19%)
WD40 repeat 222..263 CDD:293791 15/40 (38%)
WD40 repeat 266..291 CDD:293791 10/24 (42%)
nup43NP_001016144.1 WD40 29..323 CDD:295369 82/302 (27%)
WD40 <32..311 CDD:225201 80/287 (28%)
WD40 repeat 79..124 CDD:293791 9/47 (19%)
WD40 repeat 129..165 CDD:293791 13/36 (36%)
WD40 repeat 173..209 CDD:293791 7/36 (19%)
WD40 repeat 217..255 CDD:293791 13/40 (33%)
WD40 repeat 263..299 CDD:293791 11/35 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 177 1.000 Domainoid score I3524
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11639
Inparanoid 1 1.050 178 1.000 Inparanoid score I3919
OMA 1 1.010 - - QHG59409
OrthoDB 1 1.010 - - D311838at33208
OrthoFinder 1 1.000 - - FOG0007248
OrthoInspector 1 1.000 - - oto103258
Panther 1 1.100 - - LDO PTHR22652
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3018
SonicParanoid 1 1.000 - - X7163
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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