DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup43 and nup43

DIOPT Version :9

Sequence 1:NP_650716.2 Gene:Nup43 / 42209 FlyBaseID:FBgn0038609 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_998057.1 Gene:nup43 / 405828 ZFINID:ZDB-GENE-040426-2533 Length:372 Species:Danio rerio


Alignment Length:389 Identity:117/389 - (30%)
Similarity:186/389 - (47%) Gaps:67/389 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VSTHYISEKVSQVRWLP---EELQQSERFVTGSWDMDQNFVRLWRLQSNQYVTATDSEVDQIPRC 67
            :|..|||:|:|:.||.|   ..|||.|.|.|||||.:.|.|.:|.: .::..:..|.::|:.|:.
Zfish     4 ISAKYISQKISKTRWRPVSAASLQQPEVFATGSWDNENNKVSIWSV-GDRGGSTLDGDLDEEPQL 67

  Fly    68 MDKVRMEDDVTAMEFVDKDTLAVSCADGHLSVFNVHRAVEEDQMQRTSRSGRLHCFQR----SQE 128
            :...:.|.||..::|:|:|.|..:.:.|.:|:|.:     :...|..|.:   |.::|    |..
Zfish    68 LCDSQHEGDVMDLQFLDQDRLVSASSSGAVSIFKL-----QSDCQALSLA---HVWERAHRCSCN 124

  Fly   129 PAPCTDLSVYGTDIATAGEDGCVSIVSVENVRQVKRQIE-ADSMALFSICYISQQELVTANRMGV 192
            .||||.:.....:|.:.||||.|.:...:.. :|.|.|| |||..:.::.::...|::|.|.:|.
Zfish   125 NAPCTAIVCRSPEIVSVGEDGRVILYKADQA-EVTRVIENADSSTIHAVTFLRTTEVLTVNSIGQ 188

  Fly   193 IRMLDARVATEAQPKTTFMVASQDDKSNFVSSLA----------KHPMQQHILLCGSEEGSITVW 247
            ::|.|.|              .|.|....:.||.          |||.||||:..|.::|.:.:|
Zfish   189 LKMWDFR--------------QQSDSPAQILSLTGDRMPLHCVDKHPNQQHIVATGGQDGMLCIW 239

  Fly   248 DMRNLSYPASYLSAHKSPINEIGFHQKDPSKLFTAAEGGEVWMWSENKVLGCDY----------- 301
            |:|..:.|.|...||.:.:.|:.||..:|:.|||.:|.|.:..|....  |.|.           
Zfish   240 DVRQGNTPFSLTEAHSAEMWEVHFHPSNPNHLFTCSEDGSLLHWESTS--GSDVSTLLQKGWNSR 302

  Fly   302 ------------NKDGHSPWLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEAVYL 353
                        |....|.||:||..:|.::...:|.:...|:||.||....||||.|.||:|:
Zfish   303 VVSQSALSLAGENDSAVSAWLAGDSSKSRLEATHMLPSQTLSVNSLDVLEQCLVCGTDGEALYI 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup43NP_650716.2 WD40 repeat 16..73 CDD:293791 20/59 (34%)
WD40 74..347 CDD:295369 88/310 (28%)
WD40 repeat 77..125 CDD:293791 11/47 (23%)
WD40 repeat 133..166 CDD:293791 9/32 (28%)
WD40 <142..344 CDD:225201 66/235 (28%)
WD40 repeat 173..211 CDD:293791 7/37 (19%)
WD40 repeat 222..263 CDD:293791 17/50 (34%)
WD40 repeat 266..291 CDD:293791 9/24 (38%)
nup43NP_998057.1 WD40 73..>294 CDD:295369 71/245 (29%)
WD40 repeat 78..122 CDD:293791 11/51 (22%)
WD40 <138..361 CDD:225201 69/239 (29%)
WD40 repeat 170..209 CDD:293791 11/52 (21%)
WD40 repeat 214..251 CDD:293791 14/36 (39%)
WD40 repeat 259..294 CDD:293791 12/36 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170588209
Domainoid 1 1.000 102 1.000 Domainoid score I6850
eggNOG 1 0.900 - - E1_KOG4714
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11639
Inparanoid 1 1.050 178 1.000 Inparanoid score I4023
OMA 1 1.010 - - QHG59409
OrthoDB 1 1.010 - - D311838at33208
OrthoFinder 1 1.000 - - FOG0007248
OrthoInspector 1 1.000 - - oto39479
orthoMCL 1 0.900 - - OOG6_106008
Panther 1 1.100 - - LDO PTHR22652
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3018
SonicParanoid 1 1.000 - - X7163
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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