DRSC/TRiP Functional Genomics Resources

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Protein Alignment naz and rdh20

DIOPT Version :10

Sequence 1:NP_732328.1 Gene:naz / 42204 FlyBaseID:FBgn0286852 Length:406 Species:Drosophila melanogaster
Sequence 2:XP_683600.5 Gene:rdh20 / 555864 ZFINID:ZDB-GENE-131127-122 Length:316 Species:Danio rerio


Alignment Length:282 Identity:61/282 - (21%)
Similarity:97/282 - (34%) Gaps:64/282 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PNDNQIKEQIVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAIIKRELGCRTPLNSL 106
            |....|..::|::||....:|...|......|..::|...|.||.:..|.:::...|        
Zfish    29 PRTKPIDGELVLITGSGGALGRLFALEFTKHGAEVVLWDVNGEANEDTAKLVRARGG-------- 85

  Fly   107 DEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFER-IDVLVNNAGVVFANTQMPTEDG-FER 169
                      ...|..:|:.....|:..|..:..|..| :..||||||||.....:...|. .||
Zfish    86 ----------QAHAYTVDVTKREEVYRTADLVREEVGRDVTYLVNNAGVVAGERLLDCPDYLLER 140

  Fly   170 HSQVNYLAPFLLTHLLLPHLQRSEQGRILFVSAHAHQGAKIDFDDPLNVGTWSVKFHAREAFAHS 234
            ..:||..|.|......||.::....|.|:.:::.....:....:|.......:|.||  |:.||.
Zfish   141 TLKVNCHALFWTVKAFLPQMKDKNHGHIITIASVLGLFSTACVEDYCASKFAAVGFH--ESLAHE 203

  Fly   235 KLCVLLATRWMARELKGTSVTVNC---CTPGLVRGTR-------------------HFRNSPLMS 277
            .|         ..:|.|...|:.|   ...|:..|.|                   ...|:.|:.
Zfish   204 LL---------TEDLDGVKTTLVCPYIVDTGMFEGCRIREEVALILPPLEPLYCVQQAMNAILID 259

  Fly   278 S--LCVKAVTY---------PW 288
            .  :|:..:||         ||
Zfish   260 QPLVCIPRLTYLPFLARALLPW 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nazNP_732328.1 retinol-DH_like_SDR_c_like 50..342 CDD:212492 59/274 (22%)
rdh20XP_683600.5 17beta-HSDXI-like_SDR_c 38..282 CDD:187598 59/273 (22%)

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