DRSC/TRiP Functional Genomics Resources

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Protein Alignment naz and rdh12

DIOPT Version :9

Sequence 1:NP_001287387.1 Gene:naz / 42204 FlyBaseID:FBgn0286852 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001002325.1 Gene:rdh12 / 436597 ZFINID:ZDB-GENE-040718-9 Length:319 Species:Danio rerio


Alignment Length:328 Identity:121/328 - (36%)
Similarity:182/328 - (55%) Gaps:36/328 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ALTVGIVITVRTLMS--------GQRCPNDNQIKEQIVVVTGGNSGIGFEIAQALAGRGGRIILA 79
            |..:|:|..:..|:|        |..|.:..::..::.:|||.|||||.|.|..||.||.|:|||
Zfish     8 AAGLGLVALILRLLSPQIRKYAAGGSCRSTVRLDGKVALVTGANSGIGKETALDLASRGARVILA 72

  Fly    80 CRNLEAGKRAAAIIKRELGCRTPLNSLDEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFER 144
            ||:||..:.|||.|:..:|...                ||.|.|||....|:..||.:.:.|.:.
Zfish    73 CRDLEKAEEAAAEIRTRVGGAK----------------VEVRELDLADCCSIRAFAQRFLREVDH 121

  Fly   145 IDVLVNNAGVVFANTQMPTEDGFERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFVSAHAHQGAK 209
            :.:|:|||||:.. ..|.|.||||....||:|..:|||:||:..|:||...||:.||:.||....
Zfish   122 LHILINNAGVMMC-PYMKTADGFEMQIGVNHLGHYLLTYLLIGLLKRSAPSRIVVVSSLAHNFGW 185

  Fly   210 IDFDDPLNVGTWSVKFHAREAFAHSKLCVLLATRWMARELKGTSVTVNCCTPGLVRGTRHFRNSP 274
            |.|.|..:.|:    :::..|:..|||..:|.||.:||.|:|::||||...||.|| :...|:|.
Zfish   186 IRFHDLHSQGS----YNSGLAYCQSKLANVLFTRELARRLQGSNVTVNSVHPGTVR-SELVRHST 245

  Fly   275 LMSSLCVKAVTYPWMWLFMKNAYEGAQCAIRLATDPQLKEVTGEYFNDCEIAASSVTGQDKELAK 339
            |||.|      :.:..:|:|:..||||.:|..|...:|:.::|::|:||..|..:..|:.:|.|:
Zfish   246 LMSLL------FAFFSMFLKSPKEGAQTSIYCAVAEELQSISGKHFSDCAPAFVAPQGRSEETAR 304

  Fly   340 KLY 342
            ||:
Zfish   305 KLW 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nazNP_001287387.1 FabG 47..318 CDD:223959 104/270 (39%)
retinol-DH_like_SDR_c_like 50..342 CDD:212492 113/291 (39%)
rdh12NP_001002325.1 PRK06197 41..318 CDD:235737 114/295 (39%)
NADB_Rossmann 42..310 CDD:304358 114/294 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1208
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53570
OrthoDB 1 1.010 - - D414554at33208
OrthoFinder 1 1.000 - - FOG0000061
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X72
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.830

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