DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment naz and rdh10b

DIOPT Version :10

Sequence 1:NP_732328.1 Gene:naz / 42204 FlyBaseID:FBgn0286852 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_958488.1 Gene:rdh10b / 378722 ZFINID:ZDB-GENE-030909-7 Length:336 Species:Danio rerio


Alignment Length:262 Identity:66/262 - (25%)
Similarity:107/262 - (40%) Gaps:42/262 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PNDNQIKEQIVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAI---IKRELGCRTPL 103
            |.:..::.|:.|:||..||:|...|...|.|...::|...|.::.:..|.:   |.|:|   .| 
Zfish    29 PREKSVEGQVCVITGAGSGLGRLFALEFARRRATLVLWDINRQSNEETAEMAREIYRQL---KP- 89

  Fly   104 NSLDEDDNPEDRYFVEAR-YLDLCSL---RSVHHFAGQLMAEFERIDVLVNNAGVVFANTQMPTE 164
             |....|..::...::.: |..:|.:   .||:..|.::.:|...||:|:||||||.....:...
Zfish    90 -STGSSDRVQELPLLQPKVYTYMCDVSKRESVYLTAEKVRSEVGDIDLLINNAGVVSGRHLLDCP 153

  Fly   165 DG-FERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFVSAHAHQGAKIDFDDPLNVGTWSVKFHAR 228
            |. .||...||..|.|..|...||.:.....|.|:.|::..........:|.......::.||  
Zfish   154 DELIERTMMVNCHAHFWTTKAFLPKMLELNHGHIVTVASSLGLFTTAGVEDYCASKFGAIGFH-- 216

  Fly   229 EAFAHSKLCVLLATRWMARELK-----GTSVTVNC---CTPGLVRGTRHFRN-----SPLMSSLC 280
            |:.:|              |||     |..:|:.|   ...|:..|.:..:.     .||....|
Zfish   217 ESLSH--------------ELKAADKDGIKMTLVCPFLVDTGMFEGCKIRKEMAPFFPPLKPEYC 267

  Fly   281 VK 282
            ||
Zfish   268 VK 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nazNP_732328.1 retinol-DH_like_SDR_c_like 50..342 CDD:212492 65/254 (26%)
rdh10bNP_958488.1 17beta-HSDXI-like_SDR_c 38..302 CDD:187598 64/253 (25%)

Return to query results.
Submit another query.