DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PKD and Prkd3

DIOPT Version :9

Sequence 1:NP_001262705.1 Gene:PKD / 42203 FlyBaseID:FBgn0038603 Length:906 Species:Drosophila melanogaster
Sequence 2:NP_001164475.1 Gene:Prkd3 / 75292 MGIID:1922542 Length:890 Species:Mus musculus


Alignment Length:863 Identity:462/863 - (53%)
Similarity:571/863 - (66%) Gaps:96/863 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VTFLFQFGSVRDAVCVPANSLTLKTLKDLACDFINTKIPDSGLTYLSERILLFVHDYSTPNVLHI 70
            |:||.|.|..|::|.:.|..|:|..:|||.|..:..|.|:.|...:.::||||.||.::.|:|.:
Mouse    60 VSFLLQIGLTRESVTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQL 124

  Fly    71 INSAAEVVDETLVEIVLTASPILYPTSEMPTLKPHSLNVHSYKGPTFCDFCGEMLFGLVRQGLKC 135
            |.||.|:.:..|||:||:|    ..|.|...::||:|.|||||.|||||:|||||:|||||||||
Mouse   125 ITSADEIHEGDLVEVVLSA----LATVEDFQIRPHALYVHSYKAPTFCDYCGEMLWGLVRQGLKC 185

  Fly   136 DGCGQNYHKRCVVKIPNNCN----RSNDATSRRSFTLQAPRSPSGSSQQSLVSTEDSTGRNDSSS 196
            :|||.||||||..||||||:    |.....|.....|..|| |.......|:|.|..|.:..|..
Mouse   186 EGCGLNYHKRCAFKIPNNCSGVRKRRLSNVSLPGPGLSVPR-PLQPECVPLLSEESHTHQEPSKR 249

  Fly   197 SLNIPGRHQRTHSSGSRNGLMVL---RIPHTFMVHTYGIPTVCQLCKKLLKGLFKQGLQCRDCQY 258
            ..:..||......       ||:   ::||||.||:||.||:||.||:||||||:||:||:||::
Mouse   250 IPSWSGRPIWMEK-------MVMCRVKVPHTFAVHSYGRPTICQYCKRLLKGLFRQGMQCKDCKF 307

  Fly   259 NTHKKCMDKVPHDCTGEAQLSQLQIQAGAKERDNFFREEFDDSD-GDDGSEYGKYKSAMSSGVNL 322
            |.||:|..|||.||.||...:......|.   |.....:.|.|| ..|||.          |:: 
Mouse   308 NCHKRCASKVPRDCLGEVTFNGEPCSVGT---DADMPMDIDSSDVNSDGSR----------GLD- 358

  Fly   323 VAGRPREAPKALTNAHNSPPELVNGGLVDDSSVSGGETSKSSSDGQSEQSQSSTSSSPSANIPLM 387
                ..|.|        ||||        |.......|.....  :.|::..:.|.|.|.|||||
Mouse   359 ----DSEEP--------SPPE--------DKMFFLDPTDLDVE--RDEETVKTISPSTSNNIPLM 401

  Fly   388 RIVQSVKHTKKRGGQALKEGWLVHYTSLDKAVKRYYWRLDSKTITLFVSEQGSKYHKELPLAELL 452
            |:|||:||||:|....:||||:|||||.|...||:|||||||.:|||.:|.||||:||:||:|:|
Mouse   402 RVVQSIKHTKRRSSTVVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEIL 466

  Fly   453 SIESHLGDPRPECN-------YCFELRLPNLSYFVGQDPQVGAKEEQAVRLPPPDSGIGSDIAKS 510
            .:.|    |:...:       :|||:....:.||||::.  |:.....|...   :|:|.|:|:|
Mouse   467 RVSS----PQDFTSISQGSNPHCFEIITDTVVYFVGENN--GSSSHNPVLAA---TGVGLDVAQS 522

  Fly   511 WETSIRQAFMHVT----------------------NTQCCESEEQVQDMGQLYQIFPDEVLGSGQ 553
            ||.:||||.|.||                      :...|:.:|.| |:..:||||.||||||||
Mouse   523 WEKAIRQALMPVTPQASVCTSPGQGKDHKDLATSISVSNCQVQENV-DISSVYQIFADEVLGSGQ 586

  Fly   554 FGVVYGGVHKKTQREVAIKVIDKLRFPTKQEAQLKNEVAILQNISHCGVVNLERMFETPERIFVV 618
            ||:||||.|:||.|:||||||||:|||||||:||:||||||||:.|.|:||||.|||||||:|||
Mouse   587 FGIVYGGKHRKTGRDVAIKVIDKMRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVV 651

  Fly   619 MEKLKGDMLEMILSHARGRLSERVTKFLITQILIALKYLHSQNIVHCDLKPENVLLSSDAEFPQV 683
            ||||.|||||||||..:.||.||:|||::||||:||:.||.:||||||||||||||:|...||||
Mouse   652 MEKLHGDMLEMILSSEKSRLPERITKFMVTQILVALRNLHFKNIVHCDLKPENVLLASAEPFPQV 716

  Fly   684 KLCDFGYARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEEED 748
            ||||||:||||||||||||||||||||||||||:|||||||||||||||:||||||||||||:||
Mouse   717 KLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRSKGYNRSLDMWSVGVIVYVSLSGTFPFNEDED 781

  Fly   749 INDQIQNAAFMYPPNPWKEISSNAIDLINNLLQVKQRKRYTVDKSLLHYWLQDKQTYRDLRNLEA 813
            |||||||||||||||||:||||.||||||||||||.||||:|||||.|.||||.||:.|||..|.
Mouse   782 INDQIQNAAFMYPPNPWREISSEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQTWLDLREFET 846

  Fly   814 QVGAGRYLTHEADDLRWD 831
            ::|. ||:|||:||.||:
Mouse   847 RIGE-RYITHESDDARWE 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PKDNP_001262705.1 C1_1 109..154 CDD:278556 37/44 (84%)
C1 223..272 CDD:197519 32/48 (67%)
PH_PKD 396..522 CDD:269945 59/132 (45%)
STKc_PKD 539..798 CDD:270984 214/258 (83%)
S_TKc 547..799 CDD:214567 209/251 (83%)
Prkd3NP_001164475.1 C1_1 155..204 CDD:278556 39/48 (81%)
C1 272..321 CDD:237996 32/48 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..370 15/67 (22%)
PH_PKD 410..534 CDD:269945 59/132 (45%)
PH 417..531 CDD:278594 54/122 (44%)
STKc_PKD 572..831 CDD:270984 214/258 (83%)
S_TKc 580..832 CDD:214567 209/251 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850340
Domainoid 1 1.000 436 1.000 Domainoid score I562
eggNOG 1 0.900 - - E1_KOG4236
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2055
Inparanoid 1 1.050 843 1.000 Inparanoid score I437
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48438
OrthoDB 1 1.010 - - D182843at33208
OrthoFinder 1 1.000 - - FOG0002280
OrthoInspector 1 1.000 - - otm43780
orthoMCL 1 0.900 - - OOG6_103473
Panther 1 1.100 - - O PTHR22968
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2489
SonicParanoid 1 1.000 - - X1509
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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