DRSC/TRiP Functional Genomics Resources

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Protein Alignment PKD and cds1

DIOPT Version :10

Sequence 1:NP_001262705.1 Gene:PKD / 42203 FlyBaseID:FBgn0038603 Length:906 Species:Drosophila melanogaster
Sequence 2:NP_587941.1 Gene:cds1 / 2538959 PomBaseID:SPCC18B5.11C Length:460 Species:Schizosaccharomyces pombe


Alignment Length:482 Identity:132/482 - (27%)
Similarity:220/482 - (45%) Gaps:89/482 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   368 QSEQSQSSTSSSP---SANIP---------LMRIVQSVKHTKKRGGQALKEGWLVHYTSLDKAVK 420
            :.|::..:|..:|   |.||.         .|::|.    |:...|:       .....|...|.
pombe     3 EPEEATQATQEAPLHVSQNIAKQVVNNENVFMKLVM----TRMLDGK-------TEVIPLTTDVH 56

  Fly   421 RYYWRLDSKTITLFVSEQGSKYHKELPLAELLSIESHLGDPRPECNYCFELRLPNLS-------- 477
            ..:||...              ||        |.|..|..||.. |:.||:...:.:        
pombe    57 NGFWRFGR--------------HK--------SCEVVLNGPRVS-NFHFEIYQGHRNDSDESENV 98

  Fly   478 YFVGQDPQVG--------AKEEQAVRLPPPDSGIGSDIAKSWETSIRQA-FMHVTNTQCCESEEQ 533
            .|:......|        ||..:.:.....:..||..:.|...:.:.|. ..|..::|    :..
pombe    99 VFLHDHSSNGTFLNFERLAKNSRTILSNGDEIRIGLGVPKDEISFLCQVPVKHSRDSQ----KNM 159

  Fly   534 VQDMGQLYQIFPDEVLGSGQFGVVYGGVHKKTQREVAIKVIDK----LRFPTKQEAQL-KNEVAI 593
            ::.....|:|.  ..||||.|.||...|...:.:..|||:|:|    |....|:..:: :.|:.|
pombe   160 IKSENSHYEII--RTLGSGTFAVVKLAVEVNSGKWYAIKIINKRKILLTSSEKRATEMFQREIDI 222

  Fly   594 LQNISHCGVVNLERMFETPERIFVVMEKLK-GDMLEMILSHARGRLSERVTKFLITQILIALKYL 657
            |:::.|.|||....:||..:.:|:|||.:: ||:::.::  |.|.:.|:..|.|:.|:|..|.:|
pombe   223 LKSLHHPGVVQCHEIFENDDELFIVMEYVEGGDLMDFLI--ANGSIDEQDCKPLLKQLLETLLHL 285

  Fly   658 HSQNIVHCDLKPENVLLSSDAEFPQVKLCDFGYARII-GEKSFRRSVVGTPAYLAPEVLRNK--- 718
            |.|.:.|.|:||||:|:::|.   .:|:.|||.|::| |..:|..:..||..|||||||::|   
pombe   286 HKQGVTHRDIKPENILITNDF---HLKISDFGLAKVIHGTGTFLETFCGTMGYLAPEVLKSKNVN 347

  Fly   719 ---GYNRSLDMWSVGVIIYVSLSGTFPF--NEEEDINDQIQNAAFMYPPNPWKEISSNAIDLINN 778
               ||:..:|:||:|.::||.|:.:.||  :.:....:.|...|:...|....|||...|||||.
pombe   348 LDGGYDDKVDIWSLGCVLYVMLTASIPFASSSQAKCIELISKGAYPIEPLLENEISEEGIDLINR 412

  Fly   779 LLQVKQRKRYTVDKSLLHYWLQDKQTY 805
            :|::...||.:..::|.|.|.....|:
pombe   413 MLEINPEKRISESEALQHPWFYTVSTH 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PKDNP_001262705.1 C1_PKD_rpt1 102..157 CDD:410345
C1_PKD_rpt2 222..275 CDD:410346
PH_PKD 396..522 CDD:269945 24/142 (17%)
STKc_PKD 539..798 CDD:270984 96/273 (35%)
cds1NP_587941.1 FHA_RAD53-like_rpt1 5..148 CDD:438741 32/176 (18%)
STKc_Rad53_Cds1 166..432 CDD:271000 96/272 (35%)
Blue background indicates that the domain is not in the aligned region.

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