DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr1E and POLR1E

DIOPT Version :10

Sequence 1:NP_650708.1 Gene:Polr1E / 42201 FlyBaseID:FBgn0038601 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_047279685.1 Gene:POLR1E / 64425 HGNCID:17631 Length:481 Species:Homo sapiens


Alignment Length:432 Identity:94/432 - (21%)
Similarity:166/432 - (38%) Gaps:110/432 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LKFQNGSLL--GDADFSMVE---STVDGKKH---------ALVYAGDQVYTGEVKDSEEVDTYIF 73
            ::|.||.|.  |:..|::.|   ||...|::         .|.|.|:...||.:|.:.....::.
Human    88 VQFSNGKLQSPGNMRFTLYENKDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVG 152

  Fly    74 IRNKLTNKVKV--------------VPVQEALMYNHVYKKLERQKRT------------GPTMSR 112
            |.||.:.:::|              |.|:..|       .||.|.:|            |.|..:
Human   153 ILNKTSGQMEVYDAELFNMQPLFSDVSVESEL-------ALESQTKTYREKMDSCIEAFGTTKQK 210

  Fly   113 EHANKKLLKEFGGRKASRFVDNREQMMVNVEVMRQDLDETVNSSMLNEDEEDGTLGDVSINNEEY 177
            ...|.:.:...|....:|.|....:.:::.:.:     ..:.|..::.|.:|.:|         |
Human   211 RALNTRRMNRVGNESLNRAVAKAAETIIDTKGV-----TALVSDAIHNDLQDDSL---------Y 261

  Fly   178 LASIVPEFNKEATKVDEVYAVESLIPSSLLERL------------EEEAKVVFSTPVQTLPIKSE 230
            |    |....:|.|.::||..|.|:..:..|.|            ||..|::......|..|  |
Human   262 L----PPCYDDAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTSEEILKMIEENSHCTFVI--E 320

  Fly   231 YLKSCLAKIQENPVSSKRDFLHIKLIIYMDALQSLISLRSRQMQKAELS---GITEKIENDIRHR 292
            .|||..:.::      .|| ...:.|.::|   :||..|:.::.|.:.:   |:...|...:...
Human   321 ALKSLPSDVE------SRD-RQARCIWFLD---TLIKFRAHRVVKRKSALGPGVPHIINTKLLKH 375

  Fly   293 FA--DPNVAKKGTRTNFSSEKALTHFIVMALLLSEKFEVDINVLSRALATTKARIKQYAHI---- 351
            |.  ..|..:.....:.|.:..:|.::::..|....|::|:.||.|.|..::.|:.:.|..    
Human   376 FTCLTYNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLK 440

  Fly   352 -----VNALPKSNSD----ILSLRLPSKVPALKSGRRFQRKK 384
                 |:....|..|    .|||.||   ||..|.|..:|:|
Human   441 ISKRRVSVAAGSEEDHKLGTLSLPLP---PAQTSDRLAKRRK 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr1ENP_650708.1 RNA_pol_I_A49 33..372 CDD:462024 83/406 (20%)
POLR1EXP_047279685.1 RNA_pol_I_A49 98..466 CDD:462024 82/404 (20%)

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