DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr1E and polr1e

DIOPT Version :10

Sequence 1:NP_650708.1 Gene:Polr1E / 42201 FlyBaseID:FBgn0038601 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001120306.1 Gene:polr1e / 100145368 XenbaseID:XB-GENE-1003651 Length:419 Species:Xenopus tropicalis


Alignment Length:425 Identity:90/425 - (21%)
Similarity:163/425 - (38%) Gaps:89/425 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ILKFQNGSLLG--DADFSMVESTVDGKKHA------------LVYAGDQVYTGEVKDSEEVDTYI 72
            :::|.||::..  ..:|::..:..|....|            |.|..:...:..||.:.....::
 Frog    21 VVQFSNGTIQSPESVNFTLYSNKDDNNPKAKRQRILAAETDRLSYVANNFTSDAVKSNSLCRYFV 85

  Fly    73 FIRNKLTNKVKVVPVQEALMYNHVYKKLERQKRTGPTM---SREHANK--KLLKEFGGRKASRFV 132
            .:.||.|.|::|...::..|...:....|::..|...|   |:.:..|  .|::.||..|..|.:
 Frog    86 GVLNKETGKMEVYDSEQYRMQPILESNKEKELHTEDVMDQPSKSYREKVDALIESFGTNKQKRAL 150

  Fly   133 DNREQMMVNVEVMRQDLDETVNSSMLNEDEE----DGT---LGDVSINNEEYLASIVPEFNKEAT 190
            .:|:...|..|::        |.:|....||    .||   :.|.....::..:..:|..:..|.
 Frog   151 SSRKLNQVGSEIL--------NKAMAKAAEEIIESRGTKELVKDAVDKKQQETSLFLPPCDYNAN 207

  Fly   191 KVDEVYAVESLIPSSLLERLEEEAKVVFSTPVQTLPIKSEYLKSCLAKIQE----NPVSSKRDFL 251
            |.:..|..:.||.......||..:....:...:.|....|..||.|..:||    ..:..::...
 Frog   208 KPENAYKFDDLISPVEYAALETASAAFRNMTSEDLLQMVENKKSGLFVLQELQGLREIKDEKALD 272

  Fly   252 H-IKLIIYMDALQSLISLRS---RQMQKAELSGI---------------TEKIENDIRHRFADPN 297
            | .:.:.|:|||..|..||:   :.:...|..||               ..:|:|.|        
 Frog   273 HQARCLWYLDALIKLSQLRTVKRKDIMTPECPGIICGKLMKNFTVEVFKNGRIQNSI-------- 329

  Fly   298 VAKKGTRTNFSSEKALTHFIVMALLLSEKFEVDINVLSRALATTKARIKQYAHIV---------- 352
               .||    :..|.:.:.|.:||.:|: |:||:.:|...:...::||.:.|..:          
 Frog   330 ---SGT----TKTKIVAYVIAIALHISD-FQVDLTLLQSDMKLQESRILEIAKAMGLKIAKRTMY 386

  Fly   353 -NALPKSNSDILSLRLPSKV--PALKSGRRFQRKK 384
             .:|.:....|..|.:|..|  |   ||...:|||
 Frog   387 SESLIEEGHKIGMLTIPLTVYKP---SGGELKRKK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr1ENP_650708.1 RNA_pol_I_A49 33..372 CDD:462024 81/398 (20%)
polr1eNP_001120306.1 RNA_pol_I_A49 32..407 CDD:462024 80/398 (20%)

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