DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps39 and vps39

DIOPT Version :9

Sequence 1:NP_650702.1 Gene:Vps39 / 42192 FlyBaseID:FBgn0038593 Length:876 Species:Drosophila melanogaster
Sequence 2:NP_001107012.2 Gene:vps39 / 567078 ZFINID:ZDB-GENE-080530-2 Length:875 Species:Danio rerio


Alignment Length:918 Identity:317/918 - (34%)
Similarity:491/918 - (53%) Gaps:99/918 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHQAYSVHSIL-KQGVQIESIAAYGNHVILGTRSGQLIMYSVDEETG-----VDMRMFNKNFSRK 59
            ||.||....|| |..:||:.:||:.:.:::||:.|.|:.|.:.::.|     |.:...|||||:|
Zfish     1 MHDAYEPVPILEKLPLQIDCLAAWDDWLLVGTKPGHLLQYRIKKDAGTNRFEVTLEKSNKNFSKK 65

  Fly    60 PITQMEVIASENLLFVLTDLQVQVCDIRRIESNFAFMHSAPDTKGCTLFTMDVDTPKSTTGRVAT 124
             |.|:.|::...:|..|.:..:.|.|:    ..|..:......||.|||..|:...:|...:   
Zfish    66 -IQQLFVVSQYKILVSLLENNIHVHDL----LTFQQITVVSKAKGATLFACDLQQSESGEAK--- 122

  Fly   125 VIRVCCAIRRRLVFFFWKEDKLNSLELIIELSDVPRTLCWVGHAVCVGFKDEYVVYDISGKAPKK 189
             :|:|.|::|::..::||:.:.:.|:..:...|:|:::.|..:::|||||.:|.:..:.|:...|
Zfish   123 -LRMCVAVKRKIQLYYWKDREFHELQGDVTAPDIPKSMAWCENSICVGFKRDYYLIRMDGRGSIK 186

  Fly   190 HNLFLTSSSISRDPCICLIRNNMLGISKDSYLVVVDPSQYKESDGINNSTDVRPAAMDSNSSLTP 254
             .||.|...:  :|.:..:.:....:.:|...||::...........|.||: |.||:.      
Zfish   187 -ELFPTGKQL--EPLVAPLADGKAAVGQDDLTVVLNEEGVCTQKCALNWTDI-PVAMEH------ 241

  Fly   255 LLWSSPLLDLVWDEPFAVGRVNNAIEVRSLVGKDTLVQTIPELQKTKFLVHADKGTIFAAATSEL 319
                        ..|:.:..:...:|:|: |....|||:: |||:.:|:..|....::.|:...:
Zfish   242 ------------QPPYIIAVLPRYVEIRT-VEPRLLVQSV-ELQRPRFITSAGSNVVYVASNHFV 292

  Fly   320 WCIRMVEIPIQRQQLLQQKKFQLAIELTQISDEPAADRAQTIRQIHMLYAKELFTNKEFSAAMKE 384
            |.:..|.|..|.:||||.|:|:||::|.::.|:...|:.|.|..|..|:|..||..|.|..:|:.
Zfish   293 WRLVPVSIASQIRQLLQDKQFELALQLAKMKDDFDTDKRQQIHHIQNLFAFNLFCQKRFDDSMQG 357

  Fly   385 FEKAAIDPYDVIRLFPNLVPE--------PKPGTEDVTVPTSSTPALEDSDLENAYLALIEYLAW 441
            |.|...||..||.|:|:|:|.        |.|           .|.|..::||.|:||||:||..
Zfish   358 FAKLGTDPTHVIGLYPDLLPSDYRKQLHYPNP-----------LPPLSGAELEKAHLALIDYLTQ 411

  Fly   442 ARQREVVKLRD--------------TKSSSKSLLEIIDTTLLKCYLQTNDSLVAPLLRL--NQCH 490
            .|...|.:|.|              |..|.|.||:|||||||||||.||.:||:|||||  |.||
Zfish   412 KRSHLVKQLNDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCH 476

  Fly   491 LEESEKTLKKHNKISELIILYQMKGKHKEALKLLREQASIEGSVLQGRKRTIRYLQELGGDHLPL 555
            :||||..|||.:|.|||||||:.||.|::||::|.:|::...|.|:|.:||::|||.||.::|.:
Zfish   477 IEESEYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGLENLGI 541

  Fly   556 IFEFADWVLNDNPEEGLTIFTDELIEVESLPRAKVLDFFISKHKALVIPYLEHVITEWKDGNTLL 620
            ||||:.|||...||:||.|||::|.|||:|||.:||:|.....|.|.||||||:|..|.:.....
Zfish   542 IFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDQVLNFLKEGFKELAIPYLEHIIHMWDETRPEF 606

  Fly   621 HNVLLKQYREKVQRLL---------------AQQEKGEEVPELIPMRAKLYKMLEESNDYSPDRL 670
            ||||::.|.||||.|:               |.:|||    ||...|.||...||.|:.|.|:.|
Zfish   607 HNVLIQLYLEKVQGLMKAYLNTLPEGIPAVAAGKEKG----ELGEFRNKLLSFLEVSSSYEPEIL 667

  Fly   671 LEEFPTNILLEERALILGRLKKHDNVLSIYIHVLGDVAKATAYAEAHY----KEDKHIFHTLIKC 731
            :.:||.:.|||||||:|||:.||:..|.||:|:|.|...|..|...||    ..:|.::.:|::.
Zfish   668 ISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHGHYDPATNGNKDVYLSLLRM 732

  Fly   732 ILIPPTQPLYDGVPLHPDFSQVNREVALEILNTHATRIDPFEIFEHLPDDMPMPQLEKYLEKSIR 796
            .|.||.......:.:.....|.|.:.||.:|..|.::::..:....||.:..:.:::.:||..:.
Zfish   733 YLSPPDVHFLGPIKMELCEPQANLQAALNVLQLHHSKLNTTKAINLLPANTQIREIQVFLESVLE 797

  Fly   797 KMMADKHEMQMMCGFLEAESTRLENALEEQRNISFELNESSVCSECKKRFQTQSAFVRYPNGHIV 861
            :....|...|::...|:||..|::......:.:...:.:...|..|||:. ..|||.|||||.:|
Zfish   798 EKAGRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCVITDEKTCRVCKKKI-GNSAFARYPNGVVV 861

  Fly   862 H-LSCHDR 868
            | ..|.||
Zfish   862 HYFCCKDR 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps39NP_650702.1 CNH 24..304 CDD:295303 70/284 (25%)
Vps39_1 464..564 CDD:287352 60/101 (59%)
Vps39_2 759..868 CDD:287353 28/109 (26%)
vps39NP_001107012.2 CNH 20..278 CDD:295303 72/290 (25%)
Vps39_1 448..550 CDD:287352 60/101 (59%)
Clathrin 579..734 CDD:279031 62/158 (39%)
Vps39_2 760..868 CDD:287353 28/108 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590676
Domainoid 1 1.000 143 1.000 Domainoid score I4604
eggNOG 1 0.900 - - E1_KOG2063
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41025
Inparanoid 1 1.050 503 1.000 Inparanoid score I1316
OMA 1 1.010 - - QHG54136
OrthoDB 1 1.010 - - D210614at33208
OrthoFinder 1 1.000 - - FOG0004929
OrthoInspector 1 1.000 - - oto40173
orthoMCL 1 0.900 - - OOG6_102524
Panther 1 1.100 - - LDO PTHR12894
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1627
SonicParanoid 1 1.000 - - X4596
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

Return to query results.
Submit another query.