DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps39 and si:ch211-266g18.9

DIOPT Version :10

Sequence 1:NP_650702.1 Gene:Vps39 / 42192 FlyBaseID:FBgn0038593 Length:876 Species:Drosophila melanogaster
Sequence 2:XP_073784423.1 Gene:si:ch211-266g18.9 / 101883291 ZFINID:ZDB-GENE-131127-382 Length:884 Species:Danio rerio


Alignment Length:916 Identity:201/916 - (21%)
Similarity:395/916 - (43%) Gaps:172/916 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 IESIAAYGNHVILGTRSGQLIMYSVDEETG--------VDMRMFNKNFSRKPITQMEVIASENLL 73
            |:.:..:|.::.:||:.|.:...:|:..:.        |..|...::.:...:|.:.|:   |.|
Zfish    24 IQCLECFGKNLYIGTKEGAVEYLTVNNPSSQQSLTVREVGKRQMGRSGAIIKLTAIPVL---NHL 85

  Fly    74 FVLTDLQVQVCDIRRIESNFAFMHSAPDTKGCTLFTMDVDTPKSTTGRVATVIRVCCAIRRRLVF 138
            .||.|..:.|.::..:|: ...:...|:.   .||.:.    :|...|.:..:.|..:.|:.:..
Zfish    86 LVLWDGSITVLNMFSLEA-LPALKKIPNV---LLFAVS----ESGIQRDSAELIVASSRRKTVSV 142

  Fly   139 FFWKEDKLNSLELIIELSDVPRTLCWVGHAVCVGFKDEYVVYDISGKAPKKHNLFLTSSSISRDP 203
            :....|:...::.:: |...|..|..:|..:||...|.|.::|  .::....:|||.:       
Zfish   143 YKVHVDRWECVKQVV-LPQEPVLLAALGTCLCVATCDRYFLHD--HQSQNTTDLFLHN------- 197

  Fly   204 CICLIRNNMLG--ISKDSYLVVVDPSQYKESDG------INNSTDVRPAAMDSNSSLTPLLWSSP 260
               |.:.|::.  ..|..:::        ...|      :.|.|...|          |:.....
Zfish   198 ---LGKQNIIANKCGKGEFVL--------NGPGCLGMFVMKNGTSQHP----------PVQLPDG 241

  Fly   261 LLDLVWDEPFAVGRVNNAIEVRSLVGKDTLVQTIPELQKTKFLVHADKGTIFAAATSELWCIRMV 325
            ::|.....|:.:...|.::.:.|::.:. |.||:| :...:.||..:: ::|.....|:.  |:.
Zfish   242 VMDAAVHFPYVLALQNQSVHIYSILDQQ-LKQTVP-VHNARSLVPTEE-SVFIVTDKEIQ--RLS 301

  Fly   326 EIPIQRQ--QLLQQKKFQLAIELTQISDEPAADRAQ------TIRQIHMLYAKEL--------FT 374
            .:|::.|  :|:.:::.:.|:.|        .:|.|      :.:.:|    |.|        |.
Zfish   302 PVPLEDQIHELVNRQRVEEALTL--------LERLQHLLPRDSYKDLH----KNLICTSGMIKFY 354

  Fly   375 NKEFSAAMKEFEKAAIDPYDVIRLFPNLVPEPKPG-TEDVTVPTSSTPALED--SDLENAYLALI 436
            .:.|..|.:.|.|..:||.::|.|:|.:     |. :||.|..|::....:|  :...|.:....
Zfish   355 REAFVEAKELFIKGDLDPREIISLYPAM-----PVLSEDFTPQTTAVSNAKDLWTLSRNDWPTFQ 414

  Fly   437 EYLAWARQREVVKLRDTK--SSSKSLLEIIDTTLLKCYLQ--TNDSLVAPLLRLNQCHLEESEKT 497
            :||::...    .||:.|  :..::.|:.||:.|.|.||:  .|:.|...:...|.|:|:.....
Zfish   415 QYLSFLDD----FLREVKPTAQGQTCLQDIDSALFKLYLEQGENEKLDQLVSTQNNCNLQMCVAD 475

  Fly   498 LKKHNKISELIILYQMKGKHKEA----LKLLREQAS--IEGSVLQGRKRTIRYLQELGGDHLPLI 556
            |::|.:...|.:|||.:|:|..|    :|::.:::.  ...||.|...:|:..|     :|..:|
Zfish   476 LEQHKRFFTLGLLYQSQGQHFNAIQTWIKIVEDESEDPSNTSVFQHIVKTLSNL-----EHKQII 535

  Fly   557 FEFADWVLNDNPEEGLTIFT------------DELIEV-ESLPRAKVLDFFISKHKALVIPYLEH 608
            ::|.||||..:.|.|:.|||            :|:..: .|.|.|..|             |||:
Zfish   536 WKFVDWVLRRDQEAGILIFTKTNAGNHNTFVPEEVFTILNSYPVALTL-------------YLEY 587

  Fly   609 VITEWKDGNTLLHNVLLKQYREKVQRLLAQQEKGEEVPELIPMRAKLYKMLEESNDYSPDRLLEE 673
            ::.|........|.:|:..|.:::.|.||.....|...|  .||.||.::|.:|:.|:.|::.::
Zfish   588 LVNESHSKEEKHHTMLITSYVKRILRSLADDHNNESSTE--EMRHKLQQLLWQSSFYNADQIYDQ 650

  Fly   674 FPTNILLEERALILGRLKKHDNVLSIYIHVLGDVAKATAY-----AEAHYKEDKHIFHTLIKCIL 733
            ..::.|..|:|:.||:..||...|.:.::...|...|..|     |....|..:.||.||::..|
Zfish   651 IASSSLHVEQAISLGKNGKHKKALQVLVNEEKDQQAAECYCWRTSAGRDKKFTQTIFLTLLQIYL 715

  Fly   734 IPPTQPLYDGVPLHPDFSQVNREV--ALEILNTHATRIDPFEIFEHLPDDMPMPQLEKYLEKSIR 796
                              :.:..|  |:::||.:....|...:...||:...:..:.::|.:|:|
Zfish   716 ------------------ESSHHVIAAVDLLNKNPESFDLSSVLMVLPESWSLKVVLRFLCESLR 762

  Fly   797 KMMADKHEMQMMCGFLEAESTRLENALEEQRNISFELNESSVCSECKKRFQTQSAFVRYPNGHIV 861
            ..:.||....:.....:.|:.|..:||....:...:::...||..|:||. |.:.|:|.|.|.:.
Zfish   763 GTVHDKRMRGLEMSLAKVETLRHRHALMAATHEKIQVDRGCVCHSCQKRL-TGAEFLRRPTGELT 826

  Fly   862 HLSCHD 867
            |::||:
Zfish   827 HITCHN 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps39NP_650702.1 CNH 24..304 CDD:470577 52/295 (18%)
Vps39_1 464..564 CDD:371008 31/107 (29%)
Vps39_2 759..868 CDD:402126 27/109 (25%)
si:ch211-266g18.9XP_073784423.1 None

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