DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps39 and vps39

DIOPT Version :9

Sequence 1:NP_650702.1 Gene:Vps39 / 42192 FlyBaseID:FBgn0038593 Length:876 Species:Drosophila melanogaster
Sequence 2:XP_012823569.1 Gene:vps39 / 100216188 XenbaseID:XB-GENE-982373 Length:879 Species:Xenopus tropicalis


Alignment Length:918 Identity:324/918 - (35%)
Similarity:488/918 - (53%) Gaps:101/918 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHQAYSVHSIL-KQGVQIESIAAYGNHVILGTRSGQLIMYSVDEETG-----VDMRMFNKNFSRK 59
            ||.|:....|| |..:|||.:||:...:::||:.|.|::|.|.:|.|     |.:...||||::|
 Frog     1 MHDAFEPVLILEKLPLQIECLAAWEEWLLVGTKQGHLLLYRVKKEQGCNQFEVTLEKSNKNFAKK 65

  Fly    60 PITQMEVIASENLLFVLTDLQVQVCDIRRIESNFAFMHSAPDTKGCTLFTMDVDTPKSTTGRVAT 124
             |.|:.|:....:|..|.|..|.|.|:    ..|..:.:....||.:|.:..:.  ||..|.  .
 Frog    66 -IQQIHVVPQFKILVSLLDNNVCVHDL----LTFQLITTISKAKGASLLSCHLQ--KSRPGE--E 121

  Fly   125 VIRVCCAIRRRLVFFFWKEDKLNSLELIIELSDVPRTLCWVGHAVCVGFKDEYVVYDISGKAPKK 189
            |:::|.|::|:|..:|||:...:.|:....:.|||:::.|..:::|||||.:|.:..:.||...|
 Frog   122 VLKMCVAVKRKLQLYFWKDRAFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSIK 186

  Fly   190 HNLFLTSSSISRDPCICLIRNNMLGISKDSYLVVVDPSQYKESDGINNSTDVRPAAMDSNSSLTP 254
             .||.|...:  :|....:::..:.:.:|...||                      ::...:.||
 Frog   187 -ELFPTGKQL--EPLAVPLQDGKVAVGQDDLTVV----------------------LNEEGTCTP 226

  Fly   255 ---LLWSSPLLDLVWDEPFAVGRVNNAIEVRSLVGKDTLVQTIPELQKTKFLVHADKGTIFAAAT 316
               |.|:...:.:....|:.:..:...:|||:...: .|||:| |||:.:|:.......::.|:.
 Frog   227 KCALNWTDIPMAMEHQPPYIIAVLPRYVEVRTFEPR-LLVQSI-ELQRPRFVTSGGPNIVYVASN 289

  Fly   317 SELWCIRMVEIPIQRQQLLQQKKFQLAIELTQISDEPAADRAQTIRQIHMLYAKELFTNKEFSAA 381
            ..:|.:..|.|..|.|||||.|:|:||::|.::.|:...::.|.|..|..|||..||..|.|..:
 Frog   290 HFVWRLVPVSIATQIQQLLQDKQFELALQLARMKDDSDGEKLQQIHHIQNLYAFNLFCQKRFEES 354

  Fly   382 MKEFEKAAIDPYDVIRLFPNLVPE--------PKPGTEDVTVPTSSTPALEDSDLENAYLALIEY 438
            |:.|.|...||..||.::|:|:|.        |.|           .|||..::||.|.||||:|
 Frog   355 MQGFAKLGTDPTHVIGMYPDLLPSDYRKQLQYPNP-----------VPALSGAELEKASLALIDY 408

  Fly   439 LAWARQREVVKLRD---------------TKSSSKSLLEIIDTTLLKCYLQTNDSLVAPLLRL-- 486
            |...|...|.||.|               |..|.|.||:|||||||||||.||.:|||.||||  
 Frog   409 LTQKRSHLVKKLNDSDHQSTTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNGALVASLLRLEN 473

  Fly   487 NQCHLEESEKTLKKHNKISELIILYQMKGKHKEALKLLREQASIEGSVLQGRKRTIRYLQELGGD 551
            |.||:||||..|||.:|.|||||||:.||.|.:||::|.:|:....|.|:|.:||::|||.||.:
 Frog   474 NHCHVEESEHVLKKAHKYSELIILYEKKGLHDKALQVLLDQSIKANSPLKGHERTVQYLQHLGEE 538

  Fly   552 HLPLIFEFADWVLNDNPEEGLTIFTDELIEVESLPRAKVLDFFISKHKALVIPYLEHVITEWKDG 616
            ::.|||....|||..:|.:||.|||::|.|||||||..||||.::.|..|.||||||||..|:|.
 Frog   539 NISLIFAHCSWVLRIHPVDGLKIFTEDLPEVESLPRKPVLDFLLANHIDLAIPYLEHVILTWEDQ 603

  Fly   617 NTLLHNVLLKQYREKVQRLLAQQEKGEEVPEL-----IP----------MRAKLYKMLEESNDYS 666
            ....||.|:|.|.||||:|:.....|.|:.|:     :|          :|.||...|:.||.|.
 Frog   604 FPEFHNCLIKLYCEKVQKLMKDPPTGPEINEVGEDGSVPDKKEADKPEEIRRKLLDFLDISNCYQ 668

  Fly   667 PDRLLEEFPTNILLEERALILGRLKKHDNVLSIYIHVLGDVAKATAYAEAHY---KE-DKHIFHT 727
            |::|:..||.:.|||||||:|||:.||:..|.||:|:|.|...|..|...||   || ::.::.:
 Frog   669 PEQLISHFPFDGLLEERALLLGRMGKHEQALFIYVHILEDTNMAEQYCHKHYDPRKEGNRDVYLS 733

  Fly   728 LIKCILIPPTQPLYDGVPLHPDFSQVNREVALEILNTHATRIDPFEIFEHLPDDMPMPQLEKYLE 792
            ||:..|.||.......:.:..:..|.|.:.||.:|..|..:::..:....||.:..:.:::.:||
 Frog   734 LIRMYLSPPDFHCLGPIKIKLEEPQPNLKAALAVLEQHHGKLNTTKAINLLPANTKIKEIQIFLE 798

  Fly   793 KSIRKMMADKHEMQMMCGFLEAESTRLENALEEQRNISFELNESSVCSECKKRFQTQSAFVRYPN 857
            |.:.:....:...|::...|.:|..|.:......:.:...:.|..|||.|||:. ..|||.||||
 Frog   799 KVLEENAQRRRFNQVLKNLLYSEFLRAQEERISHQQVKCVITEEKVCSVCKKKI-GNSAFARYPN 862

  Fly   858 GHIVHLSC 865
            |.:||..|
 Frog   863 GVVVHYFC 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps39NP_650702.1 CNH 24..304 CDD:295303 75/287 (26%)
Vps39_1 464..564 CDD:287352 58/101 (57%)
Vps39_2 759..868 CDD:287353 30/107 (28%)
vps39XP_012823569.1 CNH 20..280 CDD:382970 77/295 (26%)
Vps39_1 449..551 CDD:371008 58/101 (57%)
Clathrin 580..739 CDD:366214 64/158 (41%)
Vps39_2 765..873 CDD:371009 30/107 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5919
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 445 1.000 Inparanoid score I1596
OMA 1 1.010 - - QHG54136
OrthoDB 1 1.010 - - D210614at33208
OrthoFinder 1 1.000 - - FOG0004929
OrthoInspector 1 1.000 - - oto105187
Panther 1 1.100 - - LDO PTHR12894
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1627
SonicParanoid 1 1.000 - - X4596
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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