DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18599 and Lbx1

DIOPT Version :10

Sequence 1:NP_650701.1 Gene:CG18599 / 42191 FlyBaseID:FBgn0038592 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001040573.1 Gene:Lbx1 / 499362 RGDID:1564197 Length:285 Species:Rattus norvegicus


Alignment Length:252 Identity:64/252 - (25%)
Similarity:101/252 - (40%) Gaps:47/252 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 SSPSVNNFNCDSVAGNGRYLHGGHQHPHPHQAGFAAVAAAVGAAPSALQSLQQLHQQHHAQQQAT 296
            :.|||.  ...|:.|....|....:|.   ..|......|:.:..|.|.:|::|         |:
  Rat    43 NKPSVR--RSYSLCGAAHLLAAADKHA---PGGLPLAGRALLSQTSPLCALEEL---------AS 93

  Fly   297 LSFQ------------REKLKSDSHKKSALKNKRVRTIFTPEQLECLEAEFERQQYMVGPERLYL 349
            .:|:            |:.:.....:::..|.::.||.||..|:..||..|..|:|:...:|..:
  Rat    94 KTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQI 158

  Fly   350 AHTLKLTEAQVKVWFQNRRIKWRKHHLELTQQRLALIRQTQLPGTSLLGNQVSVSANAAHSVSTE 414
            |..|.||.|||..||||||.|.::   :|.:.: |.:...:..|.|   .|:.:.|.|....::|
  Rat   159 AQQLGLTNAQVITWFQNRRAKLKR---DLEEMK-ADVESAKKLGPS---GQMDIVALAELEQNSE 216

  Fly   415 RT--------NGCSAA-----SPSLQE-EDNEDSKHSLSLSGALPPLSRAQSESDLS 457
            .:        .||..|     ||:|.. .........|.||.|.|...:..|..|.|
  Rat   217 ASGGGGGGGGGGCGRAKSRPGSPALPPGAPQAPGGGPLQLSPASPLTDQRASSQDCS 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18599NP_650701.1 Homeodomain 317..373 CDD:459649 25/55 (45%)
Lbx1NP_001040573.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
Homeodomain 126..182 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..285 15/62 (24%)
Blue background indicates that the domain is not in the aligned region.

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