DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18599 and msx1

DIOPT Version :10

Sequence 1:NP_650701.1 Gene:CG18599 / 42191 FlyBaseID:FBgn0038592 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001032329.1 Gene:msx1 / 394692 XenbaseID:XB-GENE-490378 Length:275 Species:Xenopus tropicalis


Alignment Length:101 Identity:40/101 - (39%)
Similarity:55/101 - (54%) Gaps:9/101 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 HKKSALKNKRVRTIFTPEQLECLEAEFERQQYMVGPERLYLAHTLKLTEAQVKVWFQNRRIKWRK 373
            ||    .|::.||.||..||..||.:|.::||:...||...:.:|.|||.|||:||||||.| .|
 Frog   147 HK----TNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAK-AK 206

  Fly   374 HHLELTQQRLALIRQTQLP---GTSL-LGNQVSVSA 405
            ...|...::|.:..:..||   |.|. ||..|..::
 Frog   207 RLQEAELEKLKMAAKPMLPPAFGISFPLGTPVPTAS 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18599NP_650701.1 Homeodomain 317..373 CDD:459649 27/55 (49%)
msx1NP_001032329.1 PTZ00449 <55..>259 CDD:185628 40/101 (40%)
Homeodomain 151..207 CDD:459649 27/56 (48%)

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