Protein Alignment CG18599 and scro

DIOPT Version :10

• Sequence 1: NP_650701.1
• Gene: CG18599 / 42191
• FlyBaseID: FBgn0038592
• Length: 475
• Species: Drosophila melanogaster
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 496
• Identity: 109/496 - (21%)
• Similarity: 166/496 - (33%)
• Gaps: 177/496 - (35%)

  Fly    45 IHAHGQPHHA----------------ALAAAAAAAVAVSAGQSSYQMEHQQQHHQLQQQQQQQQH 93
            ||.....||.                .::.|||||||             ..||.|      ...
  Fly    48 IHTAISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVA-------------HHHHNL------SSI 93

  Fly    94 HHHQQLHTHHQ----DGHHPHPPTPT-------------TGNNNNNSSSSSNSSSHNSNSNHREQ 141
            ||.|.||:.||    :.:|..|.:.|             ..|.|..|...|||||.:.||
  Fly    94 HHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINS----- 153

  Fly   142 LAAAAATATSHAQLIEAAAAHSSLDVGKSFTIAAILGLQSQRKDYNNAINLSLHDNNNIIGDDNN 206
             .....|:|...........||.             |:|:.....:| ::|:.|
  Fly   154 -PGTLTTSTMANPYAMGTLYHSP-------------GVQTYCGPTDN-LSLAGH----------- 192

  Fly   207 KCYTSNPNNNNNNNNNGGSNSGNNNSSPSVNNFNCDSVAGNGRYLHGGHQHPHPHQAGFAAVAAA 271
              ||        :..|..|..|:..:.|........|.:.:|...|.|      :.:|.||.:.
  Fly   193 --YT--------DMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMG------NMSGLAACSV- 240

  Fly   272 VGAAPSALQSLQQLHQQHHAQQQATLSFQREKLKSDSHKKS---ALKNKRVRTIFTPEQLECLEA 333
                                              |||....   |.:.|| |.:||..|:..||.
  Fly   241 ----------------------------------SDSKPLQFPLAQRRKR-RVLFTQAQVYELER 270

  Fly   334 EFERQQYMVGPERLYLAHTLKLTEAQVKVWFQNRRIKWRKHHLELTQQRLALIRQTQLPGTS--- 395
            .|::|:|:..|||.:||..:.||..|||:||||.|.|.::   :..::.:|...|...|.:|
  Fly   271 RFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKR---QAKEKAMAEQNQHNQPASSPRR 332

  Fly   396 -----LLGNQVSVSANAAHSVSTERTNGCSAASPSLQEEDNEDSKHSL-----SLSGAL------ 444
                 |:.:....|.|.:.|.|.:.....::|..:....:|.::...:     ::||.|
  Fly   333 VAVPVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGIVSVTANVSGGLNLITGD 397

  Fly   445 PPLSRAQSESDLSI-----------------CNDSLDGDSL 468
            .|.|.:...|...:                 ||::|..:||
  Fly   398 APNSHSPDTSSSLLASYGTVGGSNVAMLQQPCNNTLMSNSL 438

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG18599	NP_650701.1	Homeodomain	317..373	CDD:459649	27/55 (49%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	27/56 (48%)