DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18599 and msx1b

DIOPT Version :10

Sequence 1:NP_650701.1 Gene:CG18599 / 42191 FlyBaseID:FBgn0038592 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_571335.1 Gene:msx1b / 30511 ZFINID:ZDB-GENE-980526-26 Length:257 Species:Danio rerio


Alignment Length:312 Identity:67/312 - (21%)
Similarity:111/312 - (35%) Gaps:99/312 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 PHPPTPTTGNNNNNSSSSSNSSSHN--SNSNHREQ-----LAAAAATATSHAQLIEAAAA--HSS 164
            |..|..||....:.|.|..:....:  :::.|:.:     .:..:..|.|..|.:..:.|  |..
Zfish     4 PKGPVETTSQEKSESDSEESQKPRDMTADTGHKAKKTYLPFSVESLMAKSSCQQVACSPALQHQR 68

  Fly   165 LDVGKSFTIAAILGLQSQRKDYNNAINLSLHDNNNIIGDDNNKCYTSNPNNNNNNNNNGGSNSGN 229
            :..|:.......:.......|..::::.||:|::..:.|.....:               |||.:
Zfish    69 MGHGQDLVRTYFVEKAKVSVDTLSSVSDSLNDDSEELSDKEQSTW---------------SNSSS 118

  Fly   230 NNSSPSVNNFNCDSVAGNGRYLHGGHQHPHPHQAGFAAVAAAVGAAPSALQSLQQLHQQHHAQQQ 294
            ..|.|                     :||.|              .|..|:              
Zfish   119 FTSPP---------------------RHPSP--------------TPCTLR-------------- 134

  Fly   295 ATLSFQREKLKSDSHKKSALKNKRVRTIFTPEQLECLEAEFERQQYMVGPERLYLAHTLKLTEAQ 359
                         .||    .|::.||.|:..||..||.:|.::||:...||...:::|.|||.|
Zfish   135 -------------KHK----TNRKPRTPFSTSQLLSLERKFRQKQYLSIAERAEFSNSLNLTETQ 182

  Fly   360 VKVWFQNRRIKWRK-HHLELTQQRLA---LIRQTQLP-----GTSLLGNQVS 402
            ||:||||||.|.:: ...||.:.:.|   |:....||     .:||.|...|
Zfish   183 VKIWFQNRRAKAKRLQEAELEKFKCASKPLLAPFALPFPLGSPSSLYGPPAS 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18599NP_650701.1 Homeodomain 317..373 CDD:459649 26/55 (47%)
msx1bNP_571335.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 7/32 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..146 19/135 (14%)
Homeodomain 140..196 CDD:459649 26/55 (47%)

Return to query results.
Submit another query.