DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18599 and Hoxd4

DIOPT Version :10

Sequence 1:NP_650701.1 Gene:CG18599 / 42191 FlyBaseID:FBgn0038592 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001099355.1 Gene:Hoxd4 / 288153 RGDID:1309690 Length:251 Species:Rattus norvegicus


Alignment Length:213 Identity:62/213 - (29%)
Similarity:91/213 - (42%) Gaps:51/213 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 GGSNSGNNNSSPSVNNFNCDSVAGNGRYLHGGHQHPHPHQA---GFAAVAAAVG-AAPSALQSLQ 283
            ||...|..::.|:..:....|..|: .|...|...|.|..|   |..|.:...| ..|....:| 
  Rat    63 GGGGPGPGSALPARGHGQEPSGPGS-HYSAPGEPCPAPPPAPLPGARACSQPTGPKQPPPGTAL- 125

  Fly   284 QLHQQHHAQQQATLSFQREKLKSDSHKKSALKN------KRVRTIFTPEQLECLEAEFERQQYMV 342
                    :|.|.:....:|:    |..|...|      ||.||.:|.:|:..||.||...:|:.
  Rat   126 --------KQPAVVYPWMKKV----HVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT 178

  Fly   343 GPERLYLAHTLKLTEAQVKVWFQNRRIKWRKHHLELTQQRLALIRQTQLPGTSLLGNQVSVSANA 407
            ...|:.:||||.|:|.|:|:||||||:||:|.|              :||.|.  |...|.|::.
  Rat   179 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH--------------KLPNTK--GRSSSSSSSC 227

  Fly   408 AHSVSTERTNGCSAASPS 425
            :           |:|:||
  Rat   228 S-----------SSAAPS 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18599NP_650701.1 Homeodomain 317..373 CDD:459649 28/55 (51%)
Hoxd4NP_001099355.1 Homeodomain 153..209 CDD:459649 28/55 (51%)

Return to query results.
Submit another query.