DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7156 and Snx13

DIOPT Version :9

Sequence 1:NP_650697.1 Gene:CG7156 / 42187 FlyBaseID:FBgn0038588 Length:681 Species:Drosophila melanogaster
Sequence 2:XP_006240084.1 Gene:Snx13 / 362731 RGDID:1309778 Length:1144 Species:Rattus norvegicus


Alignment Length:506 Identity:95/506 - (18%)
Similarity:164/506 - (32%) Gaps:197/506 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IHSFTVTDT--------------QEHKGGYTIYKITSIVFPRSVPQALTCLVVWK---RFHDVKR 56
            :|:: ::||              .:|...|.:|.||  |..||    |....:||   |:.|...
  Rat   737 LHAY-ISDTVYADYDPYAVAGVCNDHGKTYALYAIT--VHRRS----LNTEEMWKTYRRYSDFHD 794

  Fly    57 LHRELSRRHKS----LQLPGKLPVPTDSTYFKRFDAAVIQRRKEYI---LQLL---DFAAQHPAL 111
            .|..::.:.::    |:||||       ..|...|...:::||:.:   ||||   :.....|||
  Rat   795 FHMRITEQFENLSSILKLPGK-------KTFNNMDRDFLEKRKKDLNAYLQLLLTPEMLKASPAL 852

  Fly   112 YKCSTFTQFFQETPSPNG------------SPLKKLYVERSLRLQTEDNGCGSGGSETGTCAGAI 164
            ..|  ...|.:......|            :||:     .|:|                ..:.|:
  Rat   853 AHC--VYDFLENKAYSKGKGDFARKMDTFVNPLR-----NSMR----------------NVSNAV 894

  Fly   165 ADICDKLDLPYDPHDAGGITPLDPRCDKEQTNNESQAKETEIELETKQE-PKTDVALTKRD---- 224
            ..:.|.|        |.|:|        :.::|..:..| .:..:.||. .|....:||.|    
  Rat   895 KSLPDSL--------AEGVT--------KMSDNVGRMSE-RLGQDIKQSFFKVPPLITKTDSDPE 942

  Fly   225 YLRLLTPMASIESDDSDYIYEAALEFSHAVQAEVNLEYAEAHERYKHGVDLLLNGAKQDSSEERR 289
            :.|:     |.:.||:             |...:.|.           |.|||.....|..|..:
  Rat   943 HCRV-----SAQLDDN-------------VDDNIPLR-----------VMLLLMDEVFDLKERNQ 978

  Fly   290 FIAK--AKIAKYLARAEEIHANFLANDCPTKKLQFQLSLDTTDGGSVSHLECPWNQLARYKVLQI 352
            ::.:  ..:.:.|.||       ...|...:|:             |.|::  |           
  Rat   979 WLRRNIKNLLQQLIRA-------TYGDTINRKI-------------VDHVD--W----------- 1010

  Fly   353 LQDRVMQVQCVTKSQQPAAIMK---------GVEKPASHSLTQSIFLPQQVPYMVQLLAYFQSEQ 408
                      :|..:|.|..:|         |:...|:....::|.:..::....:|.|....|.
  Rat  1011 ----------MTSPEQVADSVKRFRDALWPNGILAEAAPCRDKAIRMRTRIAGKTKLFAVMPDEL 1065

  Fly   409 KIFL--------LLR--------QAEGGMLYDYLQSYTPTSSKSVNYGELF 443
            |..:        :||        |....|:|.:|:.:..|......:.|||
  Rat  1066 KHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKFRELF 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7156NP_650697.1 PX_SNX15_like 8..124 CDD:132791 35/141 (25%)
MIT_SNX15 241..315 CDD:239140 11/75 (15%)
PKc_like 343..665 CDD:304357 21/126 (17%)
Snx13XP_006240084.1 PXA 273..460 CDD:295366
RGS_SNX13 553..687 CDD:188674
PX_SNX13 733..863 CDD:132783 35/141 (25%)
Nexin_C 979..1087 CDD:285792 21/150 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.