DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdh2 and Mdh2

DIOPT Version :9

Sequence 1:NP_650696.1 Gene:Mdh2 / 42185 FlyBaseID:FBgn0262559 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_112413.2 Gene:Mdh2 / 81829 RGDID:619719 Length:338 Species:Rattus norvegicus


Alignment Length:333 Identity:201/333 - (60%)
Similarity:258/333 - (77%) Gaps:0/333 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLKQVTKQLALQGVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVA 65
            ||..:.:.:.....|:||...|||.||.|.||:||||||||||||.:|||:.|.||||.||||||
  Rat     1 MLSALARPVGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA 65

  Fly    66 ADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAK 130
            ||||||:|::...|::|.:||.|.|||.||||||||||||||||||||||.||.|:..::.:.|:
  Rat    66 ADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQ 130

  Fly   131 NCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIP 195
            :||:|::.||:||||:.:||.||:.||.|||:|.::|||:|||:|||..|:....|:||..|.:|
  Rat   131 HCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195

  Fly   196 VIGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAG 260
            |||||:|.||:|::||..|.....||.:..||.||||||||||||||||||||||||||||||..
  Rat   196 VIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVF 260

  Fly   261 SLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKK 325
            ||:..:||::.|||||:|||..||.|:|||||:|||.|:::|||:.|:..:|:|::..||||||.
  Rat   261 SLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKA 325

  Fly   326 NIQKGIDF 333
            :|:||.||
  Rat   326 SIKKGEDF 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh2NP_650696.1 MDH_glyoxysomal_mitochondrial 25..334 CDD:133422 193/309 (62%)
Mdh2NP_112413.2 MDH_euk_gproteo 26..335 CDD:130833 193/308 (63%)
MDH_glyoxysomal_mitochondrial 26..334 CDD:133422 193/308 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344421
Domainoid 1 1.000 201 1.000 Domainoid score I2925
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55938
Inparanoid 1 1.050 411 1.000 Inparanoid score I1806
OMA 1 1.010 - - QHG56560
OrthoDB 1 1.010 - - D366623at33208
OrthoFinder 1 1.000 - - FOG0001716
OrthoInspector 1 1.000 - - oto97950
orthoMCL 1 0.900 - - OOG6_101212
Panther 1 1.100 - - LDO PTHR11540
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1106
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.