DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh2 and Mdh1

DIOPT Version :9

Sequence 1:NP_650696.1 Gene:Mdh2 / 42185 FlyBaseID:FBgn0262559 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001285803.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster


Alignment Length:354 Identity:86/354 - (24%)
Similarity:129/354 - (36%) Gaps:92/354 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KVTVCGAAGGIGQPLSLLL-------KQNPLVTDLALYDIVHTPGV-------AAD------LSH 70
            :|.|.||||.|...|..::       |..|:|  |.|.||....||       .||      :..
  Fly     6 RVVVTGAAGQIAYSLLYMIARGEVFGKDQPIV--LHLLDIPPMVGVLEGVVMELADCALPLLVEV 68

  Fly    71 IDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKA 135
            :.|.....||          |......:...:|||.||.|.||.:.|..|.:....::.|...|.
  Fly    69 VPTTDPAVGF----------KDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFAKKD 123

  Fly   136 L-VAIITNPVNT----CVPIAAEILKKAGVYDPKRLFGVST-LDVVRARAFIGHALGVDPQTVQI 194
            : |.::.||.||    |...|..|        |:..|...| ||..||.:.|...|||....|:.
  Fly   124 VKVLVVGNPANTNALVCSSYAPSI--------PRENFSAMTRLDQNRATSQIAAKLGVPISAVKN 180

  Fly   195 PVIGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAG------TEVVKAKAGA--GSATLSM 251
            .:|.|:...|..|...|::....|   |::.:...|.:.|      .|.|:.:..|  .:..:|.
  Fly   181 IIIWGNHSSTQYPDAGQAKVTANG---TVKSVVDAINDNGYLQGSFVETVQKRGAAVIAARKMSS 242

  Fly   252 AYAGARFA-------------GSLLK-------GLNGEKNVIECSYVQSTVTEATFFSTPLVLGK 296
            |.:.|:.|             |..:.       ..:..|:||              ||.|:.: |
  Fly   243 AMSAAKAACDHMHDWWNGTAPGQFVSMGVFSDGSYDSPKDVI--------------FSFPVEI-K 292

  Fly   297 NGVQENLGLPKLNDYEKKLLEAAIPELKK 325
            |...:.:....|:|:.|..|.....||::
  Fly   293 NKQWKIVSGLTLSDFAKTKLSVTGKELQE 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh2NP_650696.1 MDH_glyoxysomal_mitochondrial 25..334 CDD:133422 86/354 (24%)
Mdh1NP_001285803.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 86/354 (24%)
MDH_euk_cyt 6..328 CDD:130819 86/354 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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