DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh2 and ldhba

DIOPT Version :9

Sequence 1:NP_650696.1 Gene:Mdh2 / 42185 FlyBaseID:FBgn0262559 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_571322.1 Gene:ldhba / 30497 ZFINID:ZDB-GENE-991026-6 Length:334 Species:Danio rerio


Alignment Length:333 Identity:92/333 - (27%)
Similarity:143/333 - (42%) Gaps:51/333 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KVTVCGAAGGIGQ--PLSLLLKQNPLVTDLALYDIV--HTPGVAADLSHIDTKSKTAGFIGADQL 86
            |||:.| .|.:|.  .:|:||::  |..:|||.|:|  ...|...||.|.....||...: ||:.
Zfish    23 KVTIVG-VGQVGMACAVSVLLRE--LADELALVDVVEDRLKGEMLDLQHGSLFLKTPKIV-ADKD 83

  Fly    87 GDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPIA 151
            ......|.:||:.|||.::.|.:|.:|...|..|.|.|...|.|..|..::.:::|||:....:.
Zfish    84 YSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHIIPQIVKYSPDCILVVVSNPVDVLTYVT 148

  Fly   152 AEILKKAGVYDPK-RLFGVS-TLDVVRARAFIGHALGVDPQTVQIPVIGGHSGVTILPVLSQSQ- 213
               .|.:|:  || |:.|.. .||..|.|..:...||:...:....::|.| |.|.:||.|.:. 
Zfish   149 ---WKLSGL--PKHRVIGSGPNLDSARFRYIMAEKLGIHASSFNGYILGEH-GDTSVPVWSGANV 207

  Fly   214 ---PLFKGNQD-----------TIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAGSLLK 264
               .|.|.|.|           ...|:.|   ::..||:|.|   |....::..:.|....:|:|
Zfish   208 AGVSLQKLNPDIGTDKDAENWKEAHKMVV---DSAYEVIKLK---GYTNWAIGLSVADLTETLVK 266

  Fly   265 GLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKKN--- 326
            .||....|.........:.|..:.|.|.||..:||...:.:        .|.:..|.:||.:   
Zfish   267 NLNRVHPVSTMVKGMYGINEEVYLSLPCVLNSSGVGSVINM--------TLTDGEIGQLKSSADT 323

  Fly   327 ---IQKGI 331
               |||.:
Zfish   324 LWGIQKDL 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh2NP_650696.1 MDH_glyoxysomal_mitochondrial 25..334 CDD:133422 92/333 (28%)
ldhbaNP_571322.1 PLN02602 4..332 CDD:178212 92/333 (28%)
LDH_1 19..330 CDD:133429 91/330 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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