DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdh2 and ldha

DIOPT Version :10

Sequence 1:NP_650696.1 Gene:Mdh2 / 42185 FlyBaseID:FBgn0262559 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_571321.1 Gene:ldha / 30496 ZFINID:ZDB-GENE-991026-5 Length:333 Species:Danio rerio


Alignment Length:329 Identity:98/329 - (29%)
Similarity:155/329 - (47%) Gaps:47/329 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KVTVCGAA-GGIGQPLSLLLKQNPLVTDLALYDIVH--TPGVAADLSHIDTKSKTAGFIGADQLG 87
            ||||.|.. .|:...:|:|||.  |..:|||.|::.  ..|.|.||.|.....||...: ||:..
Zfish    23 KVTVVGVGMVGMAAAVSILLKD--LTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIV-ADKDY 84

  Fly    88 DSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPIAA 152
            .....|.|||:.||..::.|.:|.:|...|..|.|.|..:|.|..|..::.:::|||:....:| 
Zfish    85 SVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA- 148

  Fly   153 EILKKAGVYDPK-RLFGVST-LDVVRARAFIGHALGVDPQTVQIPVIGGH--------SGVTI-- 205
              .|.:|:  |: |:.|..| ||..|.|..:|..||:.|.:....|:|.|        |||.:  
Zfish   149 --WKLSGL--PRNRVIGSGTNLDSARFRYLMGEKLGIHPSSCHGWVVGEHGDSSVPVWSGVNVAG 209

  Fly   206 --LPVLSQSQPLFKGNQD--TIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAGSLLKGL 266
              |..|:......|..:|  ::.|:.|   ::..||:|.|   |..:.::..:.|....|:|   
Zfish   210 VSLQALNPDLGTDKDKEDWKSVHKMVV---DSAYEVIKLK---GYTSWAIGMSVADLCESIL--- 265

  Fly   267 NGEKNVIECSYVQST------VTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKK 325
               ||:.:|..|.:.      |.|..|.|.|.:||.||:.:.:.:....:.||:|:::|  |...
Zfish   266 ---KNMHKCHPVSTLVKGMHGVNEEVFLSVPCILGNNGLTDVVHMTLKPEEEKQLVKSA--ETLW 325

  Fly   326 NIQK 329
            .:||
Zfish   326 GVQK 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh2NP_650696.1 MDH_glyoxysomal_mitochondrial 25..334 CDD:133422 98/329 (30%)
ldhaNP_571321.1 LDH_1 19..330 CDD:133429 98/329 (30%)

Return to query results.
Submit another query.