DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh2 and mdh-2

DIOPT Version :9

Sequence 1:NP_650696.1 Gene:Mdh2 / 42185 FlyBaseID:FBgn0262559 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_498457.1 Gene:mdh-2 / 175936 WormBaseID:WBGene00003162 Length:341 Species:Caenorhabditis elegans


Alignment Length:333 Identity:201/333 - (60%)
Similarity:260/333 - (78%) Gaps:3/333 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KQVTKQLALQGVRTFSVGQQNNY-KVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAA 66
            |.:.:..|..|:|..||...:.. ||.:.||||||||||.|||||:|||..|||||:|:||||||
 Worm     6 KTLVQAAANSGLRAVSVRHSSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAA 70

  Fly    67 DLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKN 131
            ||||||:.:|.....|..:|..:::.:||:|||||||||||||||||||.||||::|::..|||.
 Worm    71 DLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKA 135

  Fly   132 CPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPV 196
            .||||:||||||||:.||||:|:|||||||||||:|||:||||||::||:....|.|.....:||
 Worm   136 SPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPV 200

  Fly   197 IGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAGS 261
            :|||:|:||:|:|||.:|..|.:::.|.|||.|||:||||||.|||||||||||||.||||||.:
 Worm   201 VGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANA 265

  Fly   262 LLKGLNGEKNVIECSYVQS-TVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKK 325
            |::|:.||||| :|:||.| .|....:||||:.||.|||::.||:.|::.||:||::|::|||.|
 Worm   266 LVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVSAYEQKLIDASVPELNK 329

  Fly   326 NIQKGIDF 333
            ||.||:.|
 Worm   330 NIAKGVAF 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh2NP_650696.1 MDH_glyoxysomal_mitochondrial 25..334 CDD:133422 195/311 (63%)
mdh-2NP_498457.1 PLN00106 15..333 CDD:215058 196/318 (62%)
MDH_glyoxysomal_mitochondrial 30..338 CDD:133422 195/309 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160161745
Domainoid 1 1.000 207 1.000 Domainoid score I1693
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55938
Inparanoid 1 1.050 392 1.000 Inparanoid score I1135
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56560
OrthoDB 1 1.010 - - D366623at33208
OrthoFinder 1 1.000 - - FOG0001716
OrthoInspector 1 1.000 - - oto17242
orthoMCL 1 0.900 - - OOG6_101212
Panther 1 1.100 - - LDO PTHR11540
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R700
SonicParanoid 1 1.000 - - X1106
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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