DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh2 and Ldhal6b

DIOPT Version :9

Sequence 1:NP_650696.1 Gene:Mdh2 / 42185 FlyBaseID:FBgn0262559 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_780558.1 Gene:Ldhal6b / 106557 MGIID:2146830 Length:382 Species:Mus musculus


Alignment Length:325 Identity:81/325 - (24%)
Similarity:137/325 - (42%) Gaps:31/325 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KVTVCGAAGGIGQPLSLLLKQNPLVTDLALYD--IVHTPGVAADLSHIDTKSKTAGFIGADQLGD 88
            ||::.| .|.:|...::.:....|..:|||.|  .....|...||.|.....|....:.:.....
Mouse    72 KVSIVG-TGSVGMACAIGIIAKGLTDELALVDNNEEKMKGETMDLQHGSVFMKMPNIVCSKDFRV 135

  Fly    89 SLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPIAAE 153
            : ..|:||:|.||..::...||.:|...|..|.|.:...|.|:.|:..:.:::|||:    |...
Mouse   136 T-ANSEVVIITAGARQEKNETRLNLVQRNVTIFKAMVAEIIKHSPRCKIIVVSNPVD----ILTF 195

  Fly   154 ILKKAGVYDPKRLFGVS-TLDVVRARAFIGHALGVDPQTVQIPVIGGH--------SGVTILPVL 209
            :..|...:...|:.|.. .||..|.|..:|..||:..::....|:|.|        |||.|..|.
Mouse   196 VTWKLSGFPKNRIIGSGCNLDTARFRYMLGQRLGIHSESCHGWVLGEHGDSSVPVWSGVNIAGVP 260

  Fly   210 SQSQPLFKGNQDTIEK---LTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAGSLLKGLNGEKN 271
            .:......|.....||   :...:..:...::|.|   |..:.::..:....|.|:||.|.....
Mouse   261 LRELNSAIGTSKDPEKWGDVHKEVIASAYNIIKMK---GYTSWAIGLSVTDIAESILKNLRKTHP 322

  Fly   272 V---IECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDF 333
            |   |:..|   .:.|..|.|.|.:||::|:.:.:.:......|.:::::|  |....|||.|.|
Mouse   323 VTTKIQGLY---GIKEEVFLSVPCILGESGISDIIKVKLSPTEEAQMVKSA--ETIWKIQKDIKF 382

  Fly   334  333
            Mouse   383  382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh2NP_650696.1 MDH_glyoxysomal_mitochondrial 25..334 CDD:133422 81/325 (25%)
Ldhal6bNP_780558.1 LDH_1 70..379 CDD:133429 78/320 (24%)
L-LDH-NAD 75..375 CDD:273796 74/313 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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