DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RAB8A and Rab40

DIOPT Version :10

Sequence 1:NP_005361.2 Gene:RAB8A / 4218 HGNCID:7007 Length:207 Species:Homo sapiens
Sequence 2:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster


Alignment Length:177 Identity:78/177 - (44%)
Similarity:107/177 - (60%) Gaps:13/177 - (7%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGID----------FKIRTIELDGK 55
            |.|.||||.|:||:|||.|||..:|....:.:..|.|.|  |.|          :|..||.|:||
  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGK 66

Human    56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
            |:|||:|||:||.||.||..:|.|||.||:|||||||:.|||.|..|::.::|||.. :.|:::|
  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVG 130

Human   121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
            |:..:..||||:.::.|..|....:...|.|...|.|:..:|..|||
  Fly   131 NRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB8ANP_005361.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 75/172 (44%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 5/23 (22%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 9/16 (56%)
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 77/175 (44%)
SOCS 192..234 CDD:470605
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.