DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ssdp and LUG

DIOPT Version :9

Sequence 1:NP_001262698.1 Gene:Ssdp / 42177 FlyBaseID:FBgn0011481 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001190891.1 Gene:LUG / 829390 AraportID:AT4G32551 Length:969 Species:Arabidopsis thaliana


Alignment Length:586 Identity:100/586 - (17%)
Similarity:163/586 - (27%) Gaps:230/586 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QAREKLALYVYEYLLHVGAQKAAQTFLSEIRWEKN-ITLGEPPGFLHTWWCVFWDLYCAAPERRD 78
            :|.:.|.:|:::||:....:..||.|.:|.:...: :.:..|.|||..||.||||::.|....: 
plant     7 EADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEK- 70

  Fly    79 QCDHSSEAKAFHDYGFVSSGYGVNGIGPGGPHNAGGPAPSPLGQMPPGGDGGPMGPGGPMGPNFF 143
               ||..|.::.:...:.:                                              
plant    71 ---HSEVAASYIETQMIKA---------------------------------------------- 86

  Fly   144 PNSTMRPSPPTHASSPQPPPSQMMPGQPPFMGGPRYPGGPRPGVRMQGM---------------- 192
                 |......:..||....|....|..              ::||.:                
plant    87 -----REQQLQQSQHPQVSQQQQQQQQQQ--------------IQMQQLLLQRAQQQQQQQQQQH 132

  Fly   193 ---------------------GNEFNGPPGQPMMPNS-----MDPTRPGGGMGPMNPRMNPPRGP 231
                                 ....|.||.|.....|     ..||          |:..|.|..
plant   133 HHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQQQPT----------PQQQPQRRD 187

  Fly   232 GGMGPMGYGGPGGMRGPAPGPGGMPPMGMGGAGGRPPQWQPNASAPLNAYSSSSPGNYGPGSNGP 296
            |  ..:..|...|:.|                         |.|.|:...:              
plant   188 G--SHLANGSANGLVG-------------------------NNSEPVMRQN-------------- 211

  Fly   297 PGPGTPI----------MPSPQDNTQGGPVGGPGDSMYALMKPEF-------PMGGGPDGGGGGG 344
            ||.|:.:          ||:.:::.....:...||::..|:.|..       ...|.|.|.....
plant   212 PGSGSSLASKAYEERVKMPTQRESLDEAAMKRFGDNVGQLLDPSHASILKSAAASGQPAGQVLHS 276

  Fly   345 GPGGMGPMGGGPN------------SMGPVLNGGGG-PDGS--GLDG-----------MKNSPAN 383
            ..|||.|.....|            .:.|||..... |:||  |:.|           :|....:
plant   277 TSGGMSPQVQTRNQQLPGSAVDIKSEINPVLTPRTAVPEGSLIGIPGRFAVLSVSFQLVKRVKCS 341

  Fly   384 GGPGTPRE---------DSGSGMGDYNLGGFGGPGEN-DQTESAAILKIKESMHEEAKRFEKDTD 438
            ......:.         .|||..|..||...|.|... ||..|..:        ::.|.|.:...
plant   342 ISTSAHKNLLRINDWFPVSGSNQGSNNLTLKGWPLTGFDQLRSGLL--------QQQKPFMQSQS 398

  Fly   439 HPDYFMPXQHHQQQQQQHQQHLNTVAAAVAAVVAAAASNGSAAGSSSAASIAAAALGAAASNLLS 503
            .....|....||||....||:||:.:      |:..........::.:.::....||::..::|.
plant   399 FHQLNMLTPQHQQQLMLAQQNLNSQS------VSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLP 457

  Fly   504 N 504
            |
plant   458 N 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsdpNP_001262698.1 SSDP 81..393 CDD:282372 53/405 (13%)
LUGNP_001190891.1 LisH 10..36 CDD:285685 7/25 (28%)
WD40 679..>969 CDD:225201
WD40 681..969 CDD:238121
WD40 repeat 692..729 CDD:293791
WD40 repeat 735..772 CDD:293791
WD40 repeat 777..814 CDD:293791
WD40 repeat 820..853 CDD:293791
WD40 repeat 859..899 CDD:293791
WD40 repeat 907..938 CDD:293791
WD40 repeat 944..968 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.