DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssdp and Ssbp2

DIOPT Version :9

Sequence 1:NP_001262698.1 Gene:Ssdp / 42177 FlyBaseID:FBgn0011481 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_006517391.1 Gene:Ssbp2 / 66970 MGIID:1914220 Length:389 Species:Mus musculus


Alignment Length:439 Identity:209/439 - (47%)
Similarity:237/439 - (53%) Gaps:127/439 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LALYVYEYLLHVGAQKAAQTFLSEIRWEKNITLGEPPGFLHTWWCVFWDLYCAAPERRDQCDHSS 84
            ||||||||||||||||:||||||||||||||||||||||||:||||||||||||||||:.|:|||
Mouse    42 LALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRETCEHSS 106

  Fly    85 EAKAFHDYGFVSSGYGVNGIGPGGPHNAGGPAPSP-LGQMPPGGDGGPMGPGGPMGPNFFPNSTM 148
            ||||||||                   :...|||| ||.||| |||.|:   ||:.|.||     
Mouse   107 EAKAFHDY-------------------SAAAAPSPVLGNMPP-GDGMPV---GPVPPGFF----- 143

  Fly   149 RPSPPTHASSPQPPPSQMMPGQPPFMGGPRYPGGPRPGVRM--QGMGNEFNGPPG-QPMMPNSMD 210
                                  .||| .|||||||||.:|:  |.:|    |.|| ||::|:.||
Mouse   144 ----------------------QPFM-SPRYPGGPRPPLRIPNQALG----GVPGSQPLLPSGMD 181

  Fly   211 PTRPGG--GMGPMNPRMNPPRGPGGMGP--------MGYGGPGGMRGP--APGPGGMPPMGMGGA 263
            |||..|  .||....||.||||...:||        ..||  |.||.|  |.|..|||.|.||..
Mouse   182 PTRQQGHPNMGGPMQRMTPPRGMVPLGPQSDPWLSLQNYG--GAMRPPLNALGGPGMPGMNMGPG 244

  Fly   264 GGRPPQWQPNASAPLNA----YSSSSPGNY--GPGSNGPPGPGTPIMPSPQDNTQGGPVGGPGDS 322
            ||||  | ||   |.||    |||:|||||  .||..||  |||||||||.|:|..      ||:
Mouse   245 GGRP--W-PN---PTNANSIPYSSASPGNYVGPPGGGGP--PGTPIMPSPADSTNS------GDN 295

  Fly   323 MYALM--------KPEFPMGGGPDGGGGGGGPGGMGPMGGGPNSMGPVLNGGGGPDGSG-LDGM- 377
            ||.||        :|.|||           |||..|||||........:||.   .||| :|.: 
Mouse   296 MYTLMNAVPPGPNRPNFPM-----------GPGSDGPMGGLGGMESHHMNGS---LGSGDMDSIS 346

  Fly   378 KNSPAN----GGPGTPREDSGSGMGDYNLGGFGGPGENDQTESAAILKI 422
            ||||.|    ..|||||:|...|      |.|..|.:::....:..:.:
Mouse   347 KNSPNNMSLSNQPGTPRDDGEMG------GNFLNPFQSESYSPSMTMSV 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsdpNP_001262698.1 SSDP 81..393 CDD:282372 147/347 (42%)
Ssbp2XP_006517391.1 SSDP 103..366 CDD:367969 147/347 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 194 1.000 Domainoid score I3164
eggNOG 1 0.900 - - E1_KOG4594
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I2255
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45948
OrthoDB 1 1.010 - - D387814at33208
OrthoFinder 1 1.000 - - FOG0001190
OrthoInspector 1 1.000 - - otm42344
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12610
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5390
SonicParanoid 1 1.000 - - X810
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.970

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