DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssdp and Ssbp4

DIOPT Version :9

Sequence 1:NP_001262698.1 Gene:Ssdp / 42177 FlyBaseID:FBgn0011481 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_008769362.1 Gene:Ssbp4 / 364534 RGDID:1359619 Length:416 Species:Rattus norvegicus


Alignment Length:442 Identity:194/442 - (43%)
Similarity:229/442 - (51%) Gaps:126/442 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYGKSKTSAVPSDAQAREKLALYVYEYLLHVGAQKAAQTFLSEIRWEKNITLGEPPGFLHTWWCV 65
            ||||:.....|||.|||||||||||||||||||||:||||||||||||||||||||||||:||||
  Rat     1 MYGKASKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCV 65

  Fly    66 FWDLYCAAPERRDQCDHSSEAKAFHDYGFVSSGYGVNGIGPGGPHNAGGPAPSP-LGQMPPGGDG 129
            |||||||||:||:.|:||||||.|.||                  :|...|||| :|.:.|    
  Rat    66 FWDLYCAAPDRREACEHSSEAKVFQDY------------------SAAAAAPSPVMGTLAP---- 108

  Fly   130 GPMGPGGPMGPNFFPNSTMRPSPPTHASSPQPPPSQMMPGQPPFMGGPRYPGGPRPGVRMQGMGN 194
            ......||:.|.||                           .||: .||:|||.||.:||.|.  
  Rat   109 NDAMAAGPVAPGFF---------------------------QPFI-SPRFPGGARPILRMPGQ-- 143

  Fly   195 EFNGPP-----GQPMMPNSMDPT-----RPGGGMGPMNPRMNPPRGPGGMGPMGYGGPGGMRGPA 249
                ||     .|.::|.:|||:     .|..| |||. |:.||||...:||.|:|  .|||   
  Rat   144 ----PPVGLPGSQHLIPGAMDPSPRAQGHPSLG-GPMQ-RVTPPRGMASVGPQGFG--TGMR--- 197

  Fly   250 PGPGG------MPPMGMGGAGGRPPQWQPNA-SAPLNAYSSSSPGNYGPGSNGPPGPGTPIMPSP 307
            |.|..      :|.|.| |.|.|.|...|:. |.|   |||||||:|...:.|...|||||||||
  Rat   198 PPPNSLATSQILPSMNM-GPGVRGPWASPSGNSIP---YSSSSPGSYSGPTGGGGAPGTPIMPSP 258

  Fly   308 QDNTQGGPVGGPGDSMYALMKPEFP------MGGG----PDGG-GGGG--------------GPG 347
            .|:|..      .::||.:|.|..|      :.||    |||. .|||              ||.
  Rat   259 GDSTNS------SENMYTIMNPIGPGAGRANVSGGRCASPDGDLAGGGRPEPHAALCPQFPLGPS 317

  Fly   348 GMGPMGGGPNSMGPVLNGGGGPDGSG-LDGM-KNSPA-----NGGPGTPRED 392
            ..||| ...::|.|  :...|..||| :||: ||||.     |..|||||:|
  Rat   318 PEGPM-ASMSTMEP--HHVNGSLGSGDMDGLPKNSPGAVGGLNNAPGTPRDD 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SsdpNP_001262698.1 SSDP 81..393 CDD:282372 126/362 (35%)
Ssbp4XP_008769362.1 LisH 17..43 CDD:128913 24/25 (96%)
SSDP 81..367 CDD:398282 126/362 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354588
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4594
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 331 1.000 Inparanoid score I2351
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D387814at33208
OrthoFinder 1 1.000 - - FOG0001190
OrthoInspector 1 1.000 - - otm44406
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12610
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X810
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.860

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