DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MED17 and MED17

DIOPT Version :9

Sequence 1:NP_650686.1 Gene:MED17 / 42175 FlyBaseID:FBgn0038578 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_004259.3 Gene:MED17 / 9440 HGNCID:2375 Length:651 Species:Homo sapiens


Alignment Length:675 Identity:289/675 - (42%)
Similarity:425/675 - (62%) Gaps:73/675 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCAARIDFSKTSLDDLKKEEKSAA----- 63
            :|.||:|:.||.|:.|:|.||||.|.||.::|::||:.|.|||||:.|    ..||:.||     
Human     6 AVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGS----GSEEEEAAGTEGD 66

  Fly    64 --------AAADEDKD--ATQFQESLWPWDAVRNKLKDALTEICVLSDVISIAKDKRYLVLDPLL 118
                    ::||:|.:  ..:||.||||||:|||.|:.||||:|||.||:||.:||:::.|||:.
Human    67 AQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPVS 131

  Fly   119 EEADDTK---PIVQVYSRKKAISQAAQVLLSGAERLRNAHSE-QRNRNVSDFHIELLRLRQNWRL 179
            ::|...|   ..:|:.|:||:::.|||:||.|||||..:.:| |.|:...||:.|||||||:|:|
Human   132 QDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRLRQHWKL 196

  Fly   180 KKVSNAIIGDLSYRTAGSKFGMSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKAS----- 239
            :||.:.|:||||||:|||.|...|||||.|                     |..:.|...     
Human   197 RKVGDKILGDLSYRSAGSLFPHHGTFEVIK---------------------NTDLDLDKKIPEDY 240

  Fly   240 SALRVIVPAELQGVAYIKVITQK---DQEDLCTAQLNLMGHGPNITAQVGV--WQKTLEFAQNVL 299
            ..|.|.:|::|:|.|||||..||   |..||.|  :||... |...::.|.  ||..||.|||||
Human   241 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGT--VNLFKR-PLPKSKPGSPHWQTKLEAAQNVL 302

  Fly   300 FCKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISLCHSTT------FDSSQPAPIND 358
            .|||:||||:|||:|:::.:||:|:.|||.:...|::||.||||||:.      |.:.:..| .|
Human   303 LCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATEKQCP-ED 366

  Fly   359 HDHVLEHSLHQLLREVHYKN-SHHPFPHPASAPLGPTKKRM-LAGPMAADRETLLDMTKSQTILE 421
            |.:||||:||.|:||.|.:. |....|||||||.|  .||| |:||.|.|:..:..:..|:.:||
Human   367 HLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG--HKRMRLSGPQAFDKNEINSLQSSEGLLE 429

  Fly   422 QIIAQAQHIFMRKRTQYVLDTLARDVKDPQIVSHWNAMNSPTMSCVKINIVTHGYDAIGRT-SLV 485
            :||.||:|||:|.|....:|:||..::||||.:||:.:|....|.||:.|.:.||:.|.:: .|.
Human   430 KIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQLQ 494

  Fly   486 IHVKERSLKCICRDGRVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGK 550
            :::....::.:.|||||:.|||:.|||:|.:|.|::.||:..:..||:.|.|.|||.|||:|:|.
Human   495 LNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGP 559

  Fly   551 VEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYI--ARSPRQDFFPSPLVPEKLWENLGGTF 613
            :|.:||||:..:|||:.|  .|:.:|..|:...|:.:  .|:..:|...|.::.:..|.:|.|.|
Human   560 IESIGNASAITVASPSGD--YAISVRNGPESGSKIMVQFPRNQCKDLPKSDVLQDNKWSHLRGPF 622

  Fly   614 KEVRFDKIEGKSFLNKMEFLMASLT 638
            |||:::|:||::|:.|||.||::|:
Human   623 KEVQWNKMEGRNFVYKMELLMSALS 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED17NP_650686.1 Med17 <289..390 CDD:287165 54/107 (50%)
MED17NP_004259.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..83 12/46 (26%)
Med17 <125..432 CDD:401965 143/328 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159724
Domainoid 1 1.000 216 1.000 Domainoid score I2705
eggNOG 1 0.900 - - E1_KOG4512
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3151
Inparanoid 1 1.050 491 1.000 Inparanoid score I1425
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG49235
OrthoDB 1 1.010 - - D414603at33208
OrthoFinder 1 1.000 - - FOG0007468
OrthoInspector 1 1.000 - - oto91597
orthoMCL 1 0.900 - - OOG6_104213
Panther 1 1.100 - - LDO PTHR13114
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2632
SonicParanoid 1 1.000 - - X5596
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

Return to query results.
Submit another query.