Protein Alignment MED17 and srb4

DIOPT Version :9

• Sequence 1: NP_650686.1
• Gene: MED17 / 42175
• FlyBaseID: FBgn0038578
• Length: 642
• Species: Drosophila melanogaster
• Sequence 2: NP_596566.1
• Gene: srb4 / 2540294
• PomBaseID: SPBC31F10.04c
• Length: 545
• Species: Schizosaccharomyces pombe
• Alignment Length: 390
• Identity: 72/390 - (18%)
• Similarity: 136/390 - (34%)
• Gaps: 144/390 - (36%)

  Fly    53 DDLKKE------EKSAAAAADEDKDATQFQESLWPWDAVRN-------------KLKDALTEICV 98
            :||:||      :..::|.:.|.::..:|.    ..|:.||             ..|:.:.:|.:
pombe    54 EDLQKELQKESIKDESSAKSSETENVLEFA----TLDSKRNVNDTEVESMDSQAYKKELIEQIMI 114

  Fly    99 LSDVISIAKDKRYLVLDPLLEEADDT---------KPIVQVYSR------------------KKA 136
            .....|:|.|...|:|....|.:.:|         .|....:||                  :|:
pombe   115 AQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKEKS 179

  Fly   137 ISQAAQVLLSGAERLRNAHSEQRNRNVSDFHIELLRLRQ-NWRL--KKVSNAIIGDLSYRTAGS- 197
            ::.:.:.|....|||.:....:.     :::.||::::: :|.|  .:.||.:  .:.|...|.
pombe   180 LTSSCKFLFEAKERLTSVVETEH-----EYYTELVKVKEASWPLFNSQGSNHL--SVQYSCLGGI 237

  Fly   198 KFGM--------SGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSALRVIVPAELQGVA 254
            ..|:        |.:|||                 .||:       |.:.:||::
pombe   238 SLGLGLIRMKPESKSFEV-----------------QSSL-------LYSQAALKI---------- 268

  Fly   255 YIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTLEFAQNVLFCKELFAQLAREAIQLQAPI 319
               .|..||::::.::..:......|     .|..|.:...|.:||..:::..|.:||..
pombe   269 ---SILNKDRDEIGSSTWSWPSQNCN-----SVLLKDIYKLQEILFEMDIWNSLLQEAQS----- 320

  Fly   320 PHVVIGNQIRATLLPNIQLIISLCHSTTFDSSQ-PAPINDHDHVLEHSLHQLLREVHYKNSHHPF 383
                .|||                 ...|...: ..||:| |||:..:|     |...||:...|
pombe   321 ----CGNQ-----------------GVNFTGDEILVPISD-DHVVRITL-----ETSSKNTESGF 358

  Fly   384  383
            pombe   359  358

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
MED17	NP_650686.1	Med17	<289..390	CDD:287165	22/96 (23%)
srb4	NP_596566.1	Med17	8..452	CDD:313395	72/390 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR13114
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.100