DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cdm and ipo13a

DIOPT Version :9

Sequence 1:NP_001262696.1 Gene:cdm / 42171 FlyBaseID:FBgn0261532 Length:971 Species:Drosophila melanogaster
Sequence 2:XP_694685.3 Gene:ipo13a / 566321 ZFINID:ZDB-GENE-130530-816 Length:945 Species:Danio rerio


Alignment Length:993 Identity:274/993 - (27%)
Similarity:500/993 - (50%) Gaps:88/993 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EPIDIARLEEAVVS-FYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLH 65
            |...:..:|.|:.. :|..:...:.:..:||::|:||||||||.|.|::..|..|:|||||.|||
Zfish     4 EEFTVEAVERALQQLYYDPDMGKKNVAQKWLSEAQASPQAWQFCWDLLRPEKVPEIQFFGASTLH 68

  Fly    66 SKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGE-WPGAIEEVIN 129
            :|:.:||.|:|....:.|:.:::..:.:||.|||:||.|||::|.:.|:|:|.| ||.|:.:::.
Zfish    69 AKISRHWSELPAGQLDSLRSQLMAQVGQFAAGPKMVLTRLCVALASLILHILPETWPTAVPDILC 133

  Fly   130 TFQNQRMPNVSADVQLWIMLEVLTAIPEEAQV--IHTSVKRVVLRAEIAKRVQLVIHTVERYLKL 192
            .||.......|..:.|   ||:|..:|||.|.  |.|| :|..||:.:|.....|...:::.|: 
Zfish   134 AFQTGEGDGPSRCLAL---LELLAVLPEELQSSRIVTS-RRSQLRSALAAHWSSVCRLLQQLLQ- 193

  Fly   193 QMNRVWDAEAYSNM-NRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMT-A 255
                  ..:|...: .|.::||.:||     |::.|:..:..:||              .|.| .
Zfish   194 ------QPDAPGRVRERVLRCVSSWI-----TLDVCLQDSEGILE--------------SCFTLL 233

  Fly   256 DENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH-IYML 319
            .|:|:.::.::|:|.||.||||..:..:...::...| :|.|..|   |...|.:....| |..:
Zfish   234 KESEIFDAAVETIVCIISQPDCQRFVDSLLKVVPQVL-ALQEQLK---KAVQDGDMETSHGICRI 294

  Fly   320 FVSSVERHSTLLLSGITSADPELSILVH-----RIVQEILHCTDKPGIYPVEESCSTMALAFWYM 379
            .|:..|.|...||..:.          |     .:|..|:.||..||.|||:|:.|::.|.|||.
Zfish   295 AVALGETHCRTLLEQVD----------HWQGFQALVSMIMSCTATPGHYPVDETSSSLTLTFWYT 349

  Fly   380 LQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT 444
            |||::.::..:.|......| :|||..|..:|::|:..|.::....||:||.|.||.||.|||||
Zfish   350 LQDDITSLDAERQTLYLQIY-RPLYFQLVDVLLQKACFPRDEDFTAWSADDKEQFRTYRVDISDT 413

  Fly   445 FMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRV 509
            .||.|::|...:|..|...|...:.: ..||:.|..:|..::.|||:||.........||.|:.:
Zfish   414 LMYTYELLGPELLRNLYDKLGTLLTN-STHPSSWQDVETLLFGFQSIAETVDVSYSDVIPGLIGL 477

  Fly   510 LAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-NSSMSAQATLGLKELCRD 573
            :..|...  |::|..|.:.|:||...||.::...:...:.::::|| |..:|......||.:||:
Zfish   478 IPLITAN--NIQLAETIMFTIGSLAEWLSDHSPMLANVLPVVLQGLSNPDLSVACVSALKRICRE 540

  Fly   574 CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQ 638
            |:..|..:|:.::....|.|.....|:...:.:|.::|.|:|.|..|||...|..:|:|..::|:
Zfish   541 CRHDLHLHANDIIVVSQAVLVKDIHKSPQCMWIMQALGFLLSALPREEILGKLLSLVTPHIQQLE 605

  Fly   639 AICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQA---------TDQPI-VQPVLLVMQRTM 693
            .:. ::..:.|.::..:..|.::|.|||:.  |:::|:         ..||: ..||::|:|:..
Zfish   606 KLA-SEPPSSANKLLIVHILGLLSNLFSTF--DLNKQSERLEVMRHVQTQPLDNNPVVVVLQQAF 667

  Fly   694 PIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTA 758
            |:.:.:...|:.:.:|:||.|:..:.::..|...|.|::..||..|...|.....|..|::::..
Zfish   668 PLIQTVLNKWLSDPEVVEAVCAVFEKSLKTLIHDFAPLVTQLCELIGQMFSAYPQASALDLTRQL 732

  Fly   759 IVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK-----IPQ 818
            :.:|..::.....:..||......:..:|:.....:    .|.:|:|....||::|:     :..
Zfish   733 VHIFACEKDLFSPITALLELITNITMSIFQLGSRDH----PDVVESFMQLHTQVLKRKADLYLSD 793

  Fly   819 VLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMM 883
            .|:.|.:.|..::.:     ..||:..::.:....|..:....:...|.:|:...|:..|.|.:.
Zfish   794 HLDIKAVFYCGILSF-----KFPETPTLKATCLLFTELISHYEDLPTVRDVLQEDGKLLLQTLLE 853

  Fly   884 CVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVN 948
            .:|..:|||..:..|::|.:::|...:.:.:|::..:....||:..:|...|..:...|::|:|:
Zfish   854 AIGGQSPRSLAELLAEVLFSVSRNCPSLLTLWLRDALLPSGFPSSHLTAEHKEHFCQQILREQVS 918

  Fly   949 KRLLQQHLSEMAMKTRGL 966
            ||.::..:.|.|:.:|||
Zfish   919 KRQMKDIVKEFALLSRGL 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdmNP_001262696.1 IBN_N 28..92 CDD:281761 29/63 (46%)
Xpo1 98..>217 CDD:285575 39/122 (32%)
ipo13aXP_694685.3 IBN_N 30..91 CDD:197981 29/60 (48%)
Xpo1 101..246 CDD:285575 49/174 (28%)
HEAT repeat 433..458 CDD:293787 6/25 (24%)
HEAT repeat 470..501 CDD:293787 10/32 (31%)
HEAT repeat 512..540 CDD:293787 7/27 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575785
Domainoid 1 1.000 75 1.000 Domainoid score I9013
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 421 1.000 Inparanoid score I1763
OMA 1 1.010 - - QHG55969
OrthoDB 1 1.010 - - D1032285at2759
OrthoFinder 1 1.000 - - FOG0004114
OrthoInspector 1 1.000 - - otm24537
orthoMCL 1 0.900 - - OOG6_104367
Panther 1 1.100 - - O PTHR12363
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3951
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.910

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