DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cdm and Ipo13

DIOPT Version :9

Sequence 1:NP_001262696.1 Gene:cdm / 42171 FlyBaseID:FBgn0261532 Length:971 Species:Drosophila melanogaster
Sequence 2:NP_666264.1 Gene:Ipo13 / 230673 MGIID:2385205 Length:963 Species:Mus musculus


Alignment Length:987 Identity:278/987 - (28%)
Similarity:492/987 - (49%) Gaps:81/987 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IARLEEAVVS-FYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLM 69
            :..:|:|:.. :|..|..|:.:..:||..|:.|||||.|||||:|..|..|:|:|||..||.|:.
Mouse    23 VENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKIS 87

  Fly    70 KHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGE-WPGAIEEVINTFQN 133
            ::|.::|.:..|.||.::...|.|||.|.||||.|||::|.:..:.|:.: ||.|:.:::..||.
Mouse    88 RYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA 152

  Fly   134 QRMPNVSADVQLWIMLEVLTAIPEEAQVIH-TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRV 197
            :..| |.:..:...:||:||.:|||.|... ...::.::|..:|.....|...:|:.|:      
Mouse   153 EDSP-VDSQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGTVFPLLEQLLQ------ 210

  Fly   198 WDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAE 262
            ..:.......:.:||..:|:: :...::.|..:               |.|....:  .::||.:
Mouse   211 QPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEAL---------------IQAAFAAL--QDSELFD 257

  Fly   263 SCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH 327
            |.::.:||.|.|||...|..|...||.:.|....::.:..   :|.:.:....|..:.|:..|.|
Mouse   258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAV---QNGDMETSHGICRIAVALGENH 319

  Fly   328 STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQ 392
            |..||..:......|:     :|..|:.||..||.|||.|:.|::.|.|||.|||::  :|.:.:
Mouse   320 SRALLDQVEHWQSFLA-----LVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDI--LSFEAE 377

  Fly   393 KHKCWEYI-KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYI 456
            |...::.: :|:|..|..:|:.|::.|.::....||||:.|.||.||.|||||.||.|::|.   
Mouse   378 KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG--- 439

  Fly   457 LEILAAMLDE--AIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN 519
            .|:|:.:.|:  .:......|..|...||.:|.|||:||.........:|.|:.::..|...  |
Mouse   440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISIS--N 502

  Fly   520 VKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQLKPYA- 582
            |:|..|.:.|:|:...||.::|..|...:.|::..| |..:|..:...||::||:|:..|.||| 
Mouse   503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAA 567

  Fly   583 -------DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAI 640
                   |.|:...|        |.|..:.||.::|.|:|.|:.|||.|.|..::||..::|:.:
Mouse   568 NIVAVSQDVLMKQIH--------KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL 624

  Fly   641 CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQ--------PIVQ---PVLLVMQRTMP 694
            .: :...|:.::..:..|.::|.||::|  ||.....|.        |:.|   ||::|:|:...
Mouse   625 AE-EIPNPSNKLAIVHILGLLSNLFTTL--DVSHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686

  Fly   695 IFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAI 759
            :.:::...|:.:..|:||.|:..:.::..|...|.||:..||..:...:.|...|..|::::..:
Mouse   687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTVPQASALDLTRQLV 751

  Fly   760 VMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824
            .:|..:....|.::.|.......:..||:..|..:    .|.:::|...|.|.:|:.|.:...:.
Mouse   752 HIFAHEPAHFPPIEALFLLVTSVTLSLFQQGPRDH----PDIVDSFMQLLAQALKRKPDLFLCER 812

  Fly   825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLT 889
            |....:...|...:..||:..::.|..|.|..:.:......|.:||...|...|...:..:|...
Mouse   813 LDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEIESVGKVVQEDGRMLLIAVLEAIGGQA 877

  Fly   890 PRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQ 954
            .||.:|.|||||.|:|:...:.:::|:|..:..|.||:..::...|..::..|::|:||||.:::
Mouse   878 SRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKE 942

  Fly   955 HLSEMAMKTRGL 966
            .:.|..:..|||
Mouse   943 MVKEFTLLCRGL 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdmNP_001262696.1 IBN_N 28..92 CDD:281761 28/63 (44%)
Xpo1 98..>217 CDD:285575 31/120 (26%)
Ipo13NP_666264.1 CRM1 20..>650 CDD:227432 203/675 (30%)
HEAT 1 24..54 8/29 (28%)
IBN_N 45..109 CDD:197981 28/63 (44%)
HEAT 2 56..88 19/31 (61%)
HEAT 3 95..135 16/39 (41%)
Xpo1 116..263 CDD:285575 38/171 (22%)
HEAT 4 142..179 12/37 (32%)
HEAT 5 194..231 7/42 (17%)
HEAT 6 236..268 8/48 (17%)
HEAT 7 276..325 11/51 (22%)
HEAT 8 330..372 19/48 (40%)
HEAT 9 375..438 24/62 (39%)
HEAT 10 440..476 10/35 (29%)
HEAT 11 487..522 11/36 (31%)
HEAT 12 524..558 10/33 (30%)
HEAT 13 562..600 13/45 (29%)
HEAT 14 603..648 11/45 (24%)
HEAT 15 676..716 9/39 (23%)
HEAT 16 720..754 8/33 (24%)
HEAT 17 761..803 9/45 (20%)
HEAT 18 815..845 6/29 (21%)
HEAT 19 860..893 12/32 (38%)
HEAT 20 897..931 6/33 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833066
Domainoid 1 1.000 72 1.000 Domainoid score I9341
eggNOG 1 0.900 - - E1_KOG2022
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40968
Inparanoid 1 1.050 431 1.000 Inparanoid score I1713
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55969
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004114
OrthoInspector 1 1.000 - - oto94857
orthoMCL 1 0.900 - - OOG6_104367
Panther 1 1.100 - - LDO PTHR12363
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3916
SonicParanoid 1 1.000 - - X3951
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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