DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cbp20 and ncbp2

DIOPT Version :9

Sequence 1:NP_524396.1 Gene:Cbp20 / 42166 FlyBaseID:FBgn0022943 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_775356.1 Gene:ncbp2 / 192325 ZFINID:ZDB-GENE-020419-31 Length:155 Species:Danio rerio


Alignment Length:141 Identity:106/141 - (75%)
Similarity:124/141 - (87%) Gaps:0/141 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKT 69
            |::|.||||||||:|.|||:.|:.|.|||||||||||||||:|.||::||||:.|::||||.|||
Zfish    14 VDVSQYRDQHFKGNRYEQEKLLKQSATLYVGNLSFYTTEEQVHVLFAKCGDVKRIIIGLDKIKKT 78

  Fly    70 PCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDA 134
            .|||||||||.|::||.|||||||||||||:||.||||||.|||||||||:|||||||||.|||.
Zfish    79 ACGFCFVEYYTRADAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDP 143

  Fly   135 GRGGYGKLLSQ 145
            .||||||::.:
Zfish   144 ARGGYGKMVQK 154

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Cbp20NP_524396.1 RRM_NCBP2 32..109 CDD:409686 60/76 (79%)
ncbp2NP_775356.1 RRM <36..>139 CDD:223796 81/102 (79%)
RRM_NCBP2 41..118 CDD:240686 60/76 (79%)
mRNA cap-binding. /evidence=ECO:0000250 111..115 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..155 26/34 (76%)
mRNA cap-binding. /evidence=ECO:0000250 122..126 3/3 (100%)