DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sr and wt1b

DIOPT Version :9

Sequence 1:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster
Sequence 2:XP_005159300.1 Gene:wt1b / 568416 ZFINID:ZDB-GENE-050420-319 Length:409 Species:Danio rerio


Alignment Length:453 Identity:120/453 - (26%)
Similarity:161/453 - (35%) Gaps:149/453 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   764 GPM------------SPPSNSLGNSWGLPSPDKTMFQP--------PLFSLPAHYATMQQQQQQQ 808
            |||            :.|:..:|||..||....:.:.|        |..|||:|...        
Zfish     7 GPMGSDVRDLSALLPAVPTLPVGNSNSLPVGGASQWGPMLDFHPASPYGSLPSHSFV-------- 63

  Fly   809 QQQQQQQQQQQAAGAAPSPYDDGRAAAAAAAQH--AELLGL----------------TMDCTPLL 855
                    :|:.....|.||:|......|...|  .:|.|:                .....|..
Zfish    64 --------KQEPGWGPPDPYEDPHCGLGAFTVHFSGQLTGMHGPFADPPSSQSRMFSNGPYLPGC 120

  Fly   856 LKQPP-PSYAG----ASAGFPGLGDLHSSH-----------------EQQLQQQQYVRSQPKYQW 898
            ::.|| |...|    |..|.|..|...:.|                 :..:.:||:....|.| .
Zfish   121 MESPPAPRNQGYGTVAVDGIPSYGHTPTQHSPPFPNDTFKHEDPMSPQSTMGEQQFSVPPPVY-G 184

  Fly   899 LDSPADYAQQQQQVQQVQQQQQQQQTLVLPGPTSSAS----SSNAALGVLIPKQENYPDMQPSSN 959
            ..||.|                  |||:|....:|.:    .|........|.....|.::.||.
Zfish   185 CHSPPD------------------QTLLLRNSLNSDNLYQMKSQLECVAWNPVSSLTPSIKSSSY 231

  Fly   960 GTGYSGGS----------------------------GGSSAAAAAAAAAAAAAVQLAEYSPSTSK 996
            .|..|.|:                            .|..::..:::.::.....:..| |..||
Zfish   232 ETEASSGAPPLVYSCSTQYHIHTHGLFRGLQDVRRVPGIPSSGKSSSDSSEKRPFVCSY-PGCSK 295

  Fly   997 GHEILSQVYQQSTVPLKLVPVKPRKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHT 1061
            .:..||.:....           ||:..        |:||.|....|.|||||||:|.||.|.||
Zfish   296 RYFKLSHLQMHG-----------RKHTG--------EKPYQCDYTGCGRRFSRSDQLKRHQRRHT 341

  Fly  1062 GQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC--DICGRKFARSDEKKRHAKVHLKQRIK 1122
            |.|||||..|.|.|||||||.||.|||||||||:|  ..|.:|||||||..||..:|.:...|
Zfish   342 GVKPFQCETCQRKFSRSDHLKTHTRTHTGEKPFTCRWPSCQKKFARSDELVRHHSMHQRNMSK 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srNP_001262693.1 zf-C2H2 1036..1060 CDD:278523 14/23 (61%)
C2H2 Zn finger 1038..1060 CDD:275368 13/21 (62%)
zf-H2C2_2 1052..1077 CDD:290200 15/24 (63%)
C2H2 Zn finger 1068..1088 CDD:275368 13/19 (68%)
zf-H2C2_2 1080..1105 CDD:290200 17/26 (65%)
C2H2 Zn finger 1096..1116 CDD:275368 11/21 (52%)
wt1bXP_005159300.1 WT1 9..284 CDD:280348 53/309 (17%)
COG5048 289..>341 CDD:227381 24/71 (34%)
C2H2 Zn finger 291..310 CDD:275368 6/29 (21%)
zf-C2H2 316..340 CDD:278523 14/23 (61%)
C2H2 Zn finger 318..340 CDD:275368 13/21 (62%)
zf-H2C2_2 333..357 CDD:290200 15/23 (65%)
COG5048 344..>403 CDD:227381 37/58 (64%)
C2H2 Zn finger 348..368 CDD:275368 13/19 (68%)
zf-H2C2_2 360..387 CDD:290200 17/26 (65%)
C2H2 Zn finger 376..398 CDD:275368 11/21 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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