DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sr and sp2

DIOPT Version :9

Sequence 1:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster
Sequence 2:NP_001093452.2 Gene:sp2 / 556835 ZFINID:ZDB-GENE-080410-1 Length:610 Species:Danio rerio


Alignment Length:890 Identity:177/890 - (19%)
Similarity:260/890 - (29%) Gaps:374/890 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 KTSTAAQSSGSPSTATYLSPAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAAAAA 383
            |.|.|...:.|||  .||.|                   |::|:..|..|...|...|.|.....
Zfish     5 KDSMATTVAVSPS--EYLQP-------------------STTTSQDSQPSPLALLAATCSKIGPP 48

  Fly   384 AAAAAASANNSVLRARN---------QTATPTQGG---SPGHVAVQPSATASSGRSSASHLSLLN 436
            ||.|..|...|....|.         ..|.|...|   :.|::...|:...|||.|..  :....
Zfish    49 AAQAPVSTPPSQPTTRRLHPIKPAPIAPAPPKNLGFLSAKGNIIQLPAGLGSSGASPI--VFTFQ 111

  Fly   437 TSGQHSPTSSAVEQVEAHKQLIEALPGDLNTPVTTSSDIPSFFGPTTVVEPPPITGSIE-----S 496
            :..:.:.||:|..|.:.                     ||.|.|..| ::..|..|.|:     :
Zfish   112 SPSRPAGTSTANFQYQV---------------------IPQFQGSQT-IQMMPQGGQIQIIPGTN 154

  Fly   497 EDLSLEPQVISVASPVLSHCSPLKEERSTPPALAIVKEESSNNSCNMYPQHNNNNNNNNNTTSSS 561
            :.:...|..:..|:|             |.|.||...          .|||.             
Zfish   155 QAIITSPVTVQAATP-------------TAPPLAPAP----------VPQHK------------- 183

  Fly   562 TTTTSKQTTSESNTECVGSPGNHTQSHQQQQQQLQHNNTSSSNSNCHHSHQQQQQQQQQQHMSSP 626
             |...|.:|                       |.:..|.:|.|:|.                   
Zfish   184 -TVAIKPST-----------------------QKRRQNNASVNANI------------------- 205

  Fly   627 QQQYQQHQILHQQQQLPNHHHHHHHHHHHHSQLQQLQQQQQQQQQQQQHQQQPLHQQQQLQHQQQ 691
                         .:||:                              ....||:          
Zfish   206 -------------VRLPS------------------------------GLTLPLN---------- 217

  Fly   692 QQHHQQHYQQHAIQHQQSQQQASKISYRGIFTTTGNAMNAAAAAAAAAAQQQHQQQQQHQQQL-- 754
                                           .|||:...|......|||..:.::.::.|..:  
Zfish   218 -------------------------------VTTGDVGGAQVLTETAAAPVKPKRGRKRQVAIAA 251

  Fly   755 --PSPQLGVLAGPMSPP---------------SNSL--GNSWGLPSPDKTMFQPPLFSLPAHYAT 800
              |:||      |.|||               .|.:  ||       :..:.|.|..|.||....
Zfish   252 PAPAPQ------PASPPPVAEQVEALLIETTADNIIQAGN-------NLLIVQNPGGSQPAVVQQ 303

  Fly   801 MQQQQQQQQQQQQQQQQQ-----QAAGAAPSPYDDGRAAAAAAAQHAELLGLTMDCTPLLLKQPP 860
            :|..||:..||..|...|     |||.|...|....:..                 ||.:...||
Zfish   304 VQLLQQKSDQQVVQIPPQALKVVQAASATLPPVPQRQTV-----------------TPSVQVSPP 351

  Fly   861 PSYAGASAGFPGLGDLHSSHEQQLQQQQYVRSQPKYQWLDSPADYAQQQQQVQQVQQQQQQQQTL 925
                                    :..|.:......:|            |..|:|:......|.
Zfish   352 ------------------------EPTQVLIKTASGEW------------QAVQIQETTVTTPTT 380

  Fly   926 VLPGPTSSASSSNAALGVLIPKQENYPDMQPSSNGTGYSGGSGGSSAAAAAAAAAAAAAVQLAEY 990
            ....||.:..:.....|.  .|:...|.:.|:         .||.....||..|:||.|||....
Zfish   381 PTSTPTPAVVTKKVQTGT--RKERTLPKIAPA---------GGGLITLNAAQLASAAQAVQTINI 434

  Fly   991 S-------PST----------------SKGHEILS--------QVYQQSTVPLKLVPVKPRKYPN 1024
            :       |.|                |.|.::.|        |:.|..|:.|:| ..:|.:...
Zfish   435 NGVQVQGVPVTITNAGGQQHLTVQTVPSAGLQLGSVQTQTQTMQIEQTQTLALEL-QTQPGEKKR 498

  Fly  1025 R----------PSKTP--VHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRSF 1075
            |          ..|.|  |.:|.:.|.:..|::.|.::..|..|:|:|||::||.|.  .|.:.|
Zfish   499 RMACTCPNCKDAEKKPGEVGKRKHICHIAGCEKTFRKTSLLRAHVRLHTGERPFVCNWVFCGKRF 563

  Fly  1076 SRSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVHLKQR 1120
            :|||.|..|.|||||:|.|.|:.|.::|.|||...:|.|.|:..:
Zfish   564 TRSDELQRHARTHTGDKRFECNKCQKRFMRSDHLTKHYKTHINTK 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srNP_001262693.1 zf-C2H2 1036..1060 CDD:278523 6/23 (26%)
C2H2 Zn finger 1038..1060 CDD:275368 6/21 (29%)
zf-H2C2_2 1052..1077 CDD:290200 11/26 (42%)
C2H2 Zn finger 1068..1088 CDD:275368 9/21 (43%)
zf-H2C2_2 1080..1105 CDD:290200 12/24 (50%)
C2H2 Zn finger 1096..1116 CDD:275368 8/19 (42%)
sp2NP_001093452.2 C2H2 Zn finger 524..546 CDD:275368 6/21 (29%)
COG5048 <529..>584 CDD:227381 25/54 (46%)
zf-H2C2_2 539..565 CDD:290200 11/25 (44%)
C2H2 Zn finger 554..576 CDD:275368 9/21 (43%)
zf-H2C2_2 568..591 CDD:290200 11/22 (50%)
zf-C2H2 582..604 CDD:278523 9/21 (43%)
C2H2 Zn finger 584..604 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2698
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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