DRSC/TRiP Functional Genomics Resources

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Protein Alignment sr and osr2

DIOPT Version :9

Sequence 1:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster
Sequence 2:XP_005173612.1 Gene:osr2 / 550389 ZFINID:ZDB-GENE-050417-183 Length:278 Species:Danio rerio


Alignment Length:117 Identity:38/117 - (32%)
Similarity:55/117 - (47%) Gaps:30/117 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1028 KTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR----------------------- 1069
            :|...||||.|.:  |.:.|.|.|.|..|..||:.:|||:|:                       
Zfish   154 RTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHLQES 216

  Fly  1070 -----ICMRSFSRSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVH 1116
                 .|.|:|::..:|.||:.|||..|||.|..||:.|.|:.:.:||:..|
Zfish   217 PHKCPTCGRTFNQRSNLKTHLLTHTDLKPFCCGRCGKVFRRNCDLRRHSLTH 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srNP_001262693.1 zf-C2H2 1036..1060 CDD:278523 8/23 (35%)
C2H2 Zn finger 1038..1060 CDD:275368 7/21 (33%)
zf-H2C2_2 1052..1077 CDD:290200 11/52 (21%)
C2H2 Zn finger 1068..1088 CDD:275368 7/47 (15%)
zf-H2C2_2 1080..1105 CDD:290200 13/24 (54%)
C2H2 Zn finger 1096..1116 CDD:275368 7/19 (37%)
osr2XP_005173612.1 COG5048 <55..>276 CDD:227381 38/117 (32%)
C2H2 Zn finger 136..156 CDD:275368 0/1 (0%)
zf-H2C2_2 148..173 CDD:290200 8/20 (40%)
C2H2 Zn finger 164..184 CDD:275368 7/21 (33%)
zf-H2C2_2 176..199 CDD:290200 8/22 (36%)
C2H2 Zn finger 192..212 CDD:275368 1/19 (5%)
zf-C2H2 218..240 CDD:278523 6/21 (29%)
C2H2 Zn finger 220..240 CDD:275368 6/19 (32%)
C2H2 Zn finger 248..268 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2698
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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