DRSC/TRiP Functional Genomics Resources

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Protein Alignment sr and sp2

DIOPT Version :9

Sequence 1:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster
Sequence 2:XP_031749963.1 Gene:sp2 / 549560 XenbaseID:XB-GENE-968274 Length:588 Species:Xenopus tropicalis


Alignment Length:586 Identity:127/586 - (21%)
Similarity:191/586 - (32%) Gaps:203/586 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   725 TGNAMNAAAAAAAAAAQQQHQQ--QQQHQQQLPSPQLGVLAGPMS---PPS-NSLGNSWGLP--- 780
            :.|.:..:..|.||.:..::.|  ....|...||| |.:||...|   ||: .|...|...|   
 Frog    18 SSNRIMVSMTATAAVSPSEYLQPAASAGQDAQPSP-LALLAATCSKIGPPAVESTVTSAAPPRPA 81

  Fly   781 --------------SPDKT-------------MFQPP------------LFSLP------AHYAT 800
                          ||.||             ..|.|            :|::.      ..|.|
 Frog    82 RKRLVPIKPAPLPLSPGKTSIGLFSQAKGNIIQLQAPQLSTVGTGSGQLIFTIQNPGGKIGRYQT 146

  Fly   801 MQQQQQQQQQQQQQQQQQQAAG--AAPSPYDDGRAAAAAAAQHAELLGLTMDCTPLLLKQPPPSY 863
            :|...|..|.....|.|..:.|  |..||       :...::|..:.......:..|:|.|....
 Frog   147 VQSTNQGLQNSFGNQIQLISDGGTALLSP-------STNTSKHVPIKPAPPQPSSTLVKVPNNPG 204

  Fly   864 AGASAGFP--GLGDLHSSHEQQL---QQQQYVRSQPKYQWLDSPADYAQQQQQVQQVQQQ----- 918
            .|.:...|  ...|..:....||   :|.:.||.:|.   ...|...:..|.||:.|..:     
 Frog   205 TGLTLTLPISNFSDSTTDTGTQLVSGKQNKKVRKKPP---PSIPVPGSPNQDQVETVVIETTAEN 266

  Fly   919 --QQQQQTLVLPGPTSSASSSNAALGVLIPK---------------------------------- 947
              |.....|::..|   ::..:|.|.|:.||                                  
 Frog   267 ILQAGNNLLIVQSP---STGQHAVLQVMQPKTDTQLVQIPQQALRVVQAASATLPTVPQKPVQTP 328

  Fly   948 ---------------------QENYPDMQPSSNGTGYSGGSGGS----------SAAAAAAAAA- 980
                                 ||.....||.|:..|......|:          |.|..|.|.: 
 Frog   329 ECTPTQLYIRTASGDVQAVVMQEAPAAPQPCSSSAGPIVTQTGTPVKNPLRKERSLAKIAPAGSL 393

  Fly   981 ----------AAAAVQ------LAEYSPST---------------SKGHEILS-------QVYQQ 1007
                      ||..:|      ::...|.|               |.|:..:|       |:..:
 Frog   394 INLNTTQLTTAAQGIQTININGVSMQMPVTITSTPGQPQLSVQNVSSGNVAISGLSPSQIQLQME 458

  Fly  1008 STVPLKLVPVKPRK-----YPN-----RPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTG 1062
            ..:..:|.|.:.|:     .||     :....|...:.:.|.:..|.|.|.::..|..|:|:|||
 Frog   459 QALSGELQPGEKRRRVACTCPNCKDGEKGRWGPPGRKRHVCHIPECGRTFRKTSLLRAHVRLHTG 523

  Fly  1063 QKPFQCR--ICMRSFSRSDHLTTHIRTH---TGEKPFSCDICGRKFARSDEKKRHAKVHLKQRIK 1122
            ::||.|.  .|.:.|:|||.|..|.|||   ||:|.|.|..|.::|.|||...:|.|.||  .:|
 Frog   524 ERPFVCNWGFCTKRFTRSDELQRHARTHTGVTGDKRFECPQCQKRFTRSDHVSKHFKTHL--ALK 586

  Fly  1123 K 1123
            |
 Frog   587 K 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srNP_001262693.1 zf-C2H2 1036..1060 CDD:278523 7/23 (30%)
C2H2 Zn finger 1038..1060 CDD:275368 7/21 (33%)
zf-H2C2_2 1052..1077 CDD:290200 11/26 (42%)
C2H2 Zn finger 1068..1088 CDD:275368 9/21 (43%)
zf-H2C2_2 1080..1105 CDD:290200 12/27 (44%)
C2H2 Zn finger 1096..1116 CDD:275368 8/19 (42%)
sp2XP_031749963.1 SP2_N 27..498 CDD:411776 87/484 (18%)
C2H2 Zn finger 502..521 CDD:275368 6/18 (33%)
zf-H2C2_2 514..540 CDD:404364 11/25 (44%)
C2H2 Zn finger 529..551 CDD:275368 9/21 (43%)
zf-H2C2_2 543..571 CDD:404364 12/27 (44%)
C2H2 Zn finger 562..582 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2698
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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