DRSC/TRiP Functional Genomics Resources

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Protein Alignment sr and znf665

DIOPT Version :10

Sequence 1:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster
Sequence 2:NP_001165008.1 Gene:znf665 / 100328608 XenbaseID:XB-GENE-6050027 Length:403 Species:Xenopus tropicalis


Alignment Length:181 Identity:55/181 - (30%)
Similarity:80/181 - (44%) Gaps:30/181 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1023 PNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 1087
            ||...:.| ...|:.||  .|.:|||..::||.|.|:|||:|||.|..|.:||.....||.|...
 Frog     4 PNSQMELP-SVAPHECP--ECGKRFSGRNKLTIHYRVHTGEKPFMCTKCGKSFREKHRLTEHQLI 65

  Fly  1088 HTGEKPFSCDICGRKFARSDEKKRHAKVHLKQR--IKKEKVRGEQQQQQQQQQQ----------- 1139
            |||||||.|..||:.|.:......|..:|..::  :..|..:..:|:.|....|           
 Frog    66 HTGEKPFMCTECGKSFRKKQSLTAHQLIHTGEKPFMCTECGKSFRQKHQLTAHQLIHTGEKPFMC 130

  Fly  1140 --------QQQQQQQQQLQQQQEQHHL------SLQQHQQYQQHHLLHSAD 1176
                    |:.:....||....|:..:      |.:|.|...||.|:|:.:
 Frog   131 TECGKSFRQKHRLTAHQLIHMGEKPFMCTECGKSFRQKQLLTQHQLIHTGE 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srNP_001262693.1 zf-C2H2 1036..1060 CDD:395048 10/23 (43%)
C2H2 Zn finger 1038..1060 CDD:275368 10/21 (48%)
zf-H2C2_2 1052..1077 CDD:463886 14/24 (58%)
C2H2 Zn finger 1068..1088 CDD:275368 7/19 (37%)
zf-H2C2_2 1080..1105 CDD:463886 14/24 (58%)
C2H2 Zn finger 1096..1116 CDD:275368 5/19 (26%)
znf665NP_001165008.1 COG5048 15..392 CDD:227381 52/169 (31%)
C2H2 Zn finger 18..38 CDD:275368 10/21 (48%)
C2H2 Zn finger 46..66 CDD:275368 7/19 (37%)
C2H2 Zn finger 74..94 CDD:275368 5/19 (26%)
C2H2 Zn finger 102..122 CDD:275368 4/19 (21%)
C2H2 Zn finger 130..150 CDD:275368 3/19 (16%)
C2H2 Zn finger 158..178 CDD:275368 6/19 (32%)
C2H2 Zn finger 186..206 CDD:275368
C2H2 Zn finger 214..234 CDD:275368
C2H2 Zn finger 242..262 CDD:275368
C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 298..318 CDD:275368
C2H2 Zn finger 326..346 CDD:275368
C2H2 Zn finger 354..374 CDD:275368
C2H2 Zn finger 382..402 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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