DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sr and egr1

DIOPT Version :9

Sequence 1:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster
Sequence 2:NP_001090830.1 Gene:egr1 / 100038164 XenbaseID:XB-GENE-853412 Length:499 Species:Xenopus tropicalis


Alignment Length:507 Identity:162/507 - (31%)
Similarity:201/507 - (39%) Gaps:197/507 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   755 PSPQLGVLAG--------PMSPPSNSLGNSWGLPSPDKTMFQPPLF-------SLPAHYA--TMQ 802
            |.|...:::|        |.|.||:|..:|....|.     .|||.       |.|.:.|  |..
 Frog   122 PEPLFSLVSGLVGMANASPSSAPSSSPSSSSSSSSQ-----SPPLSCSVQSNDSSPIYSAAPTFP 181

  Fly   803 QQQQQQQQQQQQQQQQQAAGAAPSPYDDGRAAAAAAAQHAELLGLTMDCTPLLLKQPPPSYAGAS 867
            ....:....|..|..|.|: .|..||                              |||:|..:.
 Frog   182 NSSPELFPDQSPQPFQNAS-TASIPY------------------------------PPPAYPVSK 215

  Fly   868 AGFPGLGDLHSSHEQQLQQQQYVRSQPKYQWLDSPADYAQQQQQVQQVQQQQQQQQTLVLPGPTS 932
            ..|                  .|...|.|.       :.|||..|..|...|:..|.:       
 Frog   216 TTF------------------QVPMIPDYL-------FPQQQGDVSLVSADQKPFQAM------- 248

  Fly   933 SASSSNAALGVLIPKQENYPDMQPSSNGTGYSGGSGGSSAAAAAAAAAAAAAVQLAEYSPSTSKG 997
                         ..:...|.:.|.|.                           :..::..||:.
 Frog   249 -------------ESRTQQPSLTPLST---------------------------IKAFATQTSQD 273

  Fly   998 HEILSQVYQQSTVPLKLVPVKPRKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTG 1062
            .:.::..||...:.    |.:.|||||||||||.||||||||||:||||||||||||||||||||
 Frog   274 LKTINSTYQSQIIK----PSRMRKYPNRPSKTPPHERPYACPVESCDRRFSRSDELTRHIRIHTG 334

  Fly  1063 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVHLKQRIKKEKVR 1127
            |||||||||||:||||||||||||||||||||:|||||||||||||:|||.|:||:|:.||    
 Frog   335 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKDKK---- 395

  Fly  1128 GEQQQQQQQQQQQQQQQQQQQLQQQQEQHHLSLQQHQQYQQHHLLHSADLAIVTSSASMXRLENS 1192
                                                           ||.|...|.||..     
 Frog   396 -----------------------------------------------ADKATPVSVASPV----- 408

  Fly  1193 ASSVDQAQTPTPTPAPAA-TQKVSLALALDLDESAFPFELTSDYGTLSPLTS 1243
            :|....|.|..|:|.|.: :..||         ||:|..:.|.:.  ||.|:
 Frog   409 SSYSPSASTSYPSPVPTSYSSPVS---------SAYPSPVHSSFP--SPTTA 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srNP_001262693.1 zf-C2H2 1036..1060 CDD:278523 22/23 (96%)
C2H2 Zn finger 1038..1060 CDD:275368 20/21 (95%)
zf-H2C2_2 1052..1077 CDD:290200 23/24 (96%)
C2H2 Zn finger 1068..1088 CDD:275368 18/19 (95%)
zf-H2C2_2 1080..1105 CDD:290200 23/24 (96%)
C2H2 Zn finger 1096..1116 CDD:275368 17/19 (89%)
egr1NP_001090830.1 DUF3446 106..180 CDD:288757 16/62 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 288..309 16/20 (80%)
zf-C2H2 308..332 CDD:278523 22/23 (96%)
C2H2 Zn finger 310..332 CDD:275368 20/21 (95%)
zf-H2C2_2 324..349 CDD:290200 23/24 (96%)
C2H2 Zn finger 340..360 CDD:275368 18/19 (95%)
zf-H2C2_2 352..377 CDD:290200 23/24 (96%)
C2H2 Zn finger 368..388 CDD:275368 17/19 (89%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 379..423 21/99 (21%)
DUF3432 401..486 CDD:288743 18/65 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10799
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000710
OrthoInspector 1 1.000 - - otm48210
Panther 1 1.100 - - O PTHR23235
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2698
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.130

Return to query results.
Submit another query.