DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and Pdgfrl

DIOPT Version :9

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_081116.3 Gene:Pdgfrl / 68797 MGIID:1916047 Length:375 Species:Mus musculus


Alignment Length:441 Identity:78/441 - (17%)
Similarity:127/441 - (28%) Gaps:187/441 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 EMIKDHLGARS-QNKTPAITNNANQSSTSSADLDDGAADDDDNKADLPVNVSSKPYWRNPKKMSF 111
            |.::|..|..| :||.|                    .:..:|:.. |.|..:||  :.||....
Mouse    14 EALEDVGGQHSPKNKRP--------------------KEQGENRIK-PTNKKAKP--KIPKVKDR 55

  Fly   112 LQTRPSGSLLTLNCHALGN-----PEPNITWYRNGT---------VDWT-RGY-GSLKRNRWT-- 158
            ..|..:....::...|:||     |...::.....|         |:|: ..| .:.|.:|.|  
Mouse    56 DSTDSTAKSQSIMMQAMGNGRFQRPAATVSLLAGQTLELRCKGSKVEWSYPAYLDTFKDSRLTVK 120

  Fly   159 -------LTMEDLVPGDCGNYTC--KVCNSLGCIRHDTQVIVSDRVNHKPILMTGPLNLTLVVNS 214
                   ||:.:....|.|.::|  ::||...|.|.:.:                          
Mouse   121 QSERYGQLTLVNSTAADTGEFSCWEQLCNGYICRRDEAK-------------------------- 159

  Fly   215 TGSMHCKYLSDLTSKKAWIFVPCHGMTNCSNNRSIIAEDKDQLDFVNVRMEQEGWYTCVESNSLG 279
            |||.:..:     ::|..:|||                .....|.|.:..:::....|       
Mouse   160 TGSTYIFF-----TEKGELFVP----------------SPSYFDVVYLNPDRQAVVPC------- 196

  Fly   280 QSNSTAYLRVVRSLHVLEAGVASGSLH-----------STSFVYIFVFGGLIFIFMTTLFVFYAI 333
                    ||.       |..|..:||           .|..||....|   |:::..       
Mouse   197 --------RVT-------APSAKVTLHREFPAKEIPANGTDIVYDMKRG---FVYLQP------- 236

  Fly   334 RKMKHEKVLKQRIETVHQWTKKVIIFKPEGGGDSSGSMDTMIMPV-VRIQKQRTTVLQNGNE--- 394
                            |...:.|:..|.|.||.|..|:...::.| |......||:|.:.|:   
Mouse   237 ----------------HSDHQGVVYCKAEAGGKSQISVKYQLLYVEVPSGPPSTTILASSNKVRG 285

  Fly   395 ------------------------PAPFNEYEFPLDSNWELPRSHLVLGAT 421
                                    |...:|....:...|.|  .|..||.|
Mouse   286 GDDISVLCTVLGEPDVEVEFRWLFPGQKDERPVTIQDTWRL--IHRGLGHT 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 112..191 CDD:299845 21/105 (20%)
IG_like 113..191 CDD:214653 21/104 (20%)
IG_like 205..289 CDD:214653 10/83 (12%)
PKc_like 404..692 CDD:304357 6/18 (33%)
STYKc 416..688 CDD:214568 3/6 (50%)
PdgfrlNP_081116.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..63 13/65 (20%)
Ig 80..143 CDD:299845 12/62 (19%)
IG_like 83..>143 CDD:214653 11/59 (19%)
I-set 272..373 CDD:254352 12/65 (18%)
Ig 293..372 CDD:299845 8/44 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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