DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htl and csf1rb

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:XP_009293978.1 Gene:csf1rb / 568405 ZFINID:ZDB-GENE-091118-1 Length:961 Species:Danio rerio


Alignment Length:883 Identity:230/883 - (26%)
Similarity:337/883 - (38%) Gaps:298/883 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 YWRNP-KKMSFLQTR----PSGSLLTLNCHALGNP---------------EPNITWYRNGTVDWT 146
            |.::| |..:..|||    ..||...|:| .|.||               .|.:    |.|.|..
Zfish   102 YVKDPDKAFTTSQTRVIVIKEGSSFLLDC-LLTNPAGTEFSLQMTNGSAVPPGM----NYTADPR 161

  Fly   147 RGYGSLKRNRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDT---QVIVSDRVNHKPILMTGPLNL 208
            ||          :.:.:|.|...|:|.|.|  ::..::..:   |:.|..:....|.:....|..
Zfish   162 RG----------ILIPNLQPSYTGDYVCMV--NMSGVQWKSKVFQITVIKKAQEPPSVSLPALQY 214

  Fly   209 TLVVNSTGSMHCKYLSD---------LTSKKAWIFVPCHGMTNCSNNRSIIAEDKDQ-------L 257
            ..:|..:..:.| |:.:         .:.||...|           .|.|..:.|.:       |
Zfish   215 VRIVGESLQIPC-YIQNHNHYYNFTWSSPKKVLNF-----------EREIKKKKKCEQVCATIYL 267

  Fly   258 DFVNVRMEQEGWYTCVESNSLGQSNSTAYLRVVRSLHV------------------------LEA 298
            .|..::|......||...|..|:::|||.||||...::                        ||.
Zfish   268 TFQQLKMSDTENLTCTAMNEAGRNSSTAVLRVVEKPYLELTPILSSEYKGNETNVVRMHGDQLEL 332

  Fly   299 GV----------ASGSLHSTSFVYIFVFGGL--IFIFMTTL------------FVFYAIRKMKHE 339
            ||          |.....|::..|...|..:  ..|:|.|:            ::|.|.....:.
Zfish   333 GVHIQAYPDVEWAKWKTPSSNHSYEETFHKIHDSDIYMATIRLKNVGAQDYGDYIFSAGSTSVNA 397

  Fly   340 KVLKQRIETVHQWTKKVIIFKPEGG---------------------------------------- 364
            .:    |.|||.:.|...:.|.|.|                                        
Zfish   398 SI----IFTVHVYQKPTTVIKWENGVVSCAATGYPIPSIQWFQYEVNRALCSDNRTSGVELMANQ 458

  Fly   365 -------------------------------------GDS------------------------- 367
                                                 ||.                         
Zfish   459 SISEQSGEYEPVLVKSALPEITANADLIFECVATNTAGDDCDFYTFTFSGPRPTSVWSTSVLISL 523

  Fly   368 --SGSMDT----MIMPVVRIQKQRTTVLQ-------NGNEPAPFNEYEFPLDSNWELPRSHLVLG 419
              ||::..    |::.:.:.:|.:...:|       :||.....:..:.|.:...|.||:.|.||
Zfish   524 GLSGALSVATLWMLILLYKNRKAQKYEIQWKIIEVNDGNNYTFIDPSQLPYNKKLEFPRNKLKLG 588

  Fly   420 ATLGEGAFGRVVMAEVNNAI-------VAVKMVKEGHTDDDIASLVREMEVMKIIGRHINIINLL 477
            ..||.||||:||.|.....:       |||||:|.....::..:|:.|::::..||.|.||:|||
Zfish   589 QVLGAGAFGKVVQATAIGLVKDETITRVAVKMLKPSARFEEREALMSELKILNYIGPHENIVNLL 653

  Fly   478 GCCSQNGPLYVIVEYAPHGNLKDF-----------------------LYKNRPF----------- 508
            |.|:|.||:.:|.||..||:|.:|                       ||||...           
Zfish   654 GACTQGGPMLMITEYCCHGDLLNFLRQRVETFVNTVLGVQSFAEDSNLYKNVTIQKQHPARNAYS 718

  Fly   509 GRDQDRD--SSQPPPSPPAHVITEK----------DLIKFAHQIARGMDYLASRRCIHRDLAARN 561
            |.|..||  |.|.|..|......|:          ||:.|::|:|:|||:|||:.||||||||||
Zfish   719 GLDSFRDTPSGQMPKEPFQESCNEELENMLSLDNMDLLMFSYQVAQGMDFLASKNCIHRDLAARN 783

  Fly   562 VLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFYDSKSDVWSYGILLWEI 626
            |||:|..::||.||||||||.:...|....|.|||:|||:|||:.|..|..:|||||||:|||||
Zfish   784 VLVADCRIVKICDFGLARDIMNDTNYVVKGNARLPVKWMSPESIFECLYTVQSDVWSYGVLLWEI 848

  Fly   627 MTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADDRPPFTEIVEYMDKL 691
            .:.|..|||.:....:.|..:..|..|.:|......:|.:|:.||......||.|.:|.|.:.||
Zfish   849 FSLGMSPYPNVAIDAQFYKMIKDGYHMPQPDFAPHEMYTIMKMCWRQEPTTRPTFADITELIAKL 913

  Fly   692 L--QTKED----YLDVD---IAN-LDTPPSTSDEEEDE 719
            |  ||.||    |.::.   :|| .:|.|..:|:...|
Zfish   914 LPMQTSEDNETMYPELRRHLMANHCNTSPVCTDQAGSE 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 26/111 (23%)
Ig strand B 121..125 CDD:409353 1/3 (33%)
Ig strand C 134..138 CDD:409353 0/3 (0%)
Ig strand E 157..161 CDD:409353 0/3 (0%)
Ig strand F 171..176 CDD:409353 2/4 (50%)
Ig strand G 184..187 CDD:409353 0/2 (0%)
Ig 200..289 CDD:472250 21/104 (20%)
Ig strand B 216..220 CDD:409353 0/3 (0%)
Ig strand C 229..233 CDD:409353 2/3 (67%)
Ig strand E 255..259 CDD:409353 1/10 (10%)
Ig strand F 269..274 CDD:409353 2/4 (50%)
Ig strand G 282..285 CDD:409353 1/2 (50%)
Protein Kinases, catalytic domain 404..692 CDD:473864 135/340 (40%)
csf1rbXP_009293978.1 Ig_3 22..87 CDD:464046
IG_like 116..197 CDD:214653 21/97 (22%)
IG_like 210..299 CDD:214653 21/100 (21%)
Ig 327..405 CDD:472250 16/81 (20%)
Ig strand B 330..334 CDD:409353 2/3 (67%)
Ig strand C 344..348 CDD:409353 1/3 (33%)
Ig strand E 371..375 CDD:409353 1/3 (33%)
Ig strand F 385..390 CDD:409353 1/4 (25%)
Ig strand G 398..401 CDD:409353 0/6 (0%)
Ig 411..>467 CDD:472250 3/55 (5%)
Ig strand B 418..422 CDD:409256 1/3 (33%)
Ig strand C 431..435 CDD:409256 0/3 (0%)
Ig strand E 452..456 CDD:409256 0/3 (0%)
Protein Kinases, catalytic domain 548..914 CDD:473864 138/365 (38%)
Blue background indicates that the domain is not in the aligned region.

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