DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and pdgfrb

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:XP_021336701.1 Gene:pdgfrb / 559529 ZFINID:ZDB-GENE-030805-2 Length:1072 Species:Danio rerio


Alignment Length:786 Identity:223/786 - (28%)
Similarity:334/786 - (42%) Gaps:213/786 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 EMIKDHLGARSQNKTPAITN-NANQSSTSSADLDDGAADDDDNKADLPVNVS---------SKPY 102
            |.:.|.|.:.|......||: :.::|......:.:|.   .|.:|...:|::         :.|.
Zfish   256 EPLTDVLSSMSMRSCLNITDVSLDRSGQYVCHVHEGV---QDQRASASINITVLEKGFVSLTPPL 317

  Fly   103 WRNPKKMSFLQTRPSGSLLTLNCHALGNPEPNITWYRNGTVDWTRGYGSLKRNRW----TLTMED 163
            .||       .:...|..:.|.......|:|.:.|.::|.|  .||:...:.:..    |||:..
Zfish   318 DRN-------ISAQLGENVELKVEIEAYPKPTVQWRKDGAV--IRGHSMREEHETRFVSTLTLVR 373

  Fly   164 LVPGDCGNYTCKVCN--SLGCIRHDTQVIVSDRV-----NHKPILMTGPLNLTLVVNSTGSMHCK 221
            ......|.|...|.|  :|..:..|.:|.|..::     :|.|             ....::.| 
Zfish   374 TRLQQMGLYKVTVQNEDALKEMIFDLEVKVPPQITELSDHHLP-------------EKKHAVTC- 424

  Fly   222 YLSDLTSKKAWIFVPCHGMTNCSNNRSI---IAEDKDQLDFVNVRMEQEGWYTCVESNSLGQSNS 283
             :::...|.:..:..|..||.|||..::   :.||.:     :|.::....|           ||
Zfish   425 -VAEGVPKPSIQWFSCDSMTRCSNRSAVWSPLVEDPE-----SVTIQTNVTY-----------NS 472

  Fly   284 TAYLRVVRSLHVL----------EAGVASGS-------LHSTSFVYIFVFG---GLIFIFMTTLF 328
            |..:..|.|...|          ||....|:       ::||.|..:.|..   .|:.|.:.::.
Zfish   473 TRKIHQVLSQVTLVRPQLLTIRCEASNERGARARDIRLVNSTLFSQVAVLAAVLALVVIVIISII 537

  Fly   329 VFYAI-RKMKHEKVLKQRIETVHQWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTTVLQNG 392
            :..|: ||       |.|.|.  :|  |||         .|.|:|                   |
Zfish   538 ILIAVWRK-------KPRYEI--RW--KVI---------ESVSLD-------------------G 563

  Fly   393 NEPAPFNEYEFPLDSNWELPRSHLVLGATLGEGAFGRVVMAEV-------NNAIVAVKMVKEGHT 450
            :|....:....|.|..||:||..||||.|||.|||||||.|..       :...|||||:|....
Zfish   564 HEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYGLGISQSATKVAVKMLKSTAR 628

  Fly   451 DDDIASLVREMEVMKIIGRHINIINLLGCCSQNGPLYVIVEYAPHGNLKDFLYKNR--------- 506
            ..:..:|:.|:::|..:|.||||:||||.|::.||||::.||..:|:|.|:|::|:         
Zfish   629 RSETQALMSELKIMSHLGPHINIVNLLGACTKQGPLYLVTEYCRYGDLVDYLHRNKHSFLQNFAD 693

  Fly   507 ---------------------PFG-------RDQDRDSS------------------QPPP--SP 523
                                 .||       .|..:|..                  ||.|  ||
Zfish   694 KNHIANGTQICNDSDSGKEYVSFGSECDGGYMDMTKDEQTEYVPMQELADTIKYADIQPSPYESP 758

  Fly   524 --------------------PAHVITEKDLIKFAHQIARGMDYLASRRCIHRDLAARNVLVSDDY 568
                                .:.|::..||:.|::|:|:||::|||:.|:||||||||||:.:..
Zfish   759 YQQDIYQEQGHRVDHSLVISDSPVLSYTDLVGFSYQVAQGMEFLASKNCVHRDLAARNVLICEGK 823

  Fly   569 VLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFYDSKSDVWSYGILLWEIMTYGQQP 633
            :.||.||||||||...:.|....:..||:|||||||:....|.:.|||||||||||||.|.|..|
Zfish   824 LAKICDFGLARDIMHDNNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTP 888

  Fly   634 YPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADDRPPFTEIVEYMDKLLQT--KE 696
            ||.:...|..|:.|..|.||.||:..|..||.:||:||....:.||.|:.:|..|..:|..  |:
Zfish   889 YPDLPMNELFYSALKRGYRMAKPSYASDEIYEVMRKCWDEKYEKRPEFSFLVHTMGNMLSDAYKK 953

  Fly   697 DYLDVD 702
            .|..|:
Zfish   954 KYSQVN 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 22/95 (23%)
Ig strand B 121..125 CDD:409353 1/3 (33%)
Ig strand C 134..138 CDD:409353 0/3 (0%)
Ig strand E 157..161 CDD:409353 2/7 (29%)
Ig strand F 171..176 CDD:409353 1/4 (25%)
Ig strand G 184..187 CDD:409353 0/2 (0%)
Ig 200..289 CDD:472250 15/91 (16%)
Ig strand B 216..220 CDD:409353 0/3 (0%)
Ig strand C 229..233 CDD:409353 1/3 (33%)
Ig strand E 255..259 CDD:409353 0/3 (0%)
Ig strand F 269..274 CDD:409353 1/4 (25%)
Ig strand G 282..285 CDD:409353 2/2 (100%)
Protein Kinases, catalytic domain 404..692 CDD:473864 141/371 (38%)
pdgfrbXP_021336701.1 Ig 212..305 CDD:472250 11/51 (22%)
Ig strand B 229..233 CDD:409447
Ig strand C 242..246 CDD:409447
Ig strand E 269..273 CDD:409447 0/3 (0%)
Ig strand F 283..288 CDD:409447 0/4 (0%)
Ig strand G 298..301 CDD:409447 0/2 (0%)
Ig 309..403 CDD:472250 22/102 (22%)
Ig strand B 329..333 CDD:409445 1/3 (33%)
Ig strand C 342..346 CDD:409445 0/3 (0%)
Ig strand E 367..371 CDD:409445 2/3 (67%)
Ig strand F 381..386 CDD:409445 1/4 (25%)
Ig strand G 394..397 CDD:409445 0/2 (0%)
Ig_3 404..499 CDD:464046 22/125 (18%)
Protein Kinases, catalytic domain 549..947 CDD:473864 151/429 (35%)
Blue background indicates that the domain is not in the aligned region.

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