DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htl and kitb

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001137390.2 Gene:kitb / 497629 ZFINID:ZDB-GENE-050916-2 Length:957 Species:Danio rerio


Alignment Length:664 Identity:216/664 - (32%)
Similarity:297/664 - (44%) Gaps:144/664 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GSLLTLNCHALGNPEPN-ITW-YRNGTVDWTRGYGSLKRNRWTLTMEDL----VPG-DCGNYTCK 175
            |..|||:......|:|| :.| |.|..:..|..:.....|:....:.:|    |.| :.|.||..
Zfish   326 GESLTLSVEITSYPKPNDVYWTYNNQELQNTSEHVITLHNQQYRYISELRLVRVHGSEGGIYTFS 390

  Fly   176 VCNSLGCIRHDTQVIVSDRVNHKPILMT--GPLNLTLVVNSTGSMHCKYLSDLTSKKAWIFV-PC 237
            ..:....:.....|    .|..||::::  ||::        |.:.|........|.:|.:. |.
Zfish   391 ANHKYESVNQSFTV----HVICKPVIVSQEGPVD--------GQVRCVASGYPVPKISWYYCEPP 443

  Fly   238 HGMTNCSNNRSIIAEDKDQLDFVNV------RMEQEG--------WYT--CVESNSLGQSNSTAY 286
            |  |.||:..:....| ::...:.|      |.|.|.        ::|  ||.| :.|:...|.:
Zfish   444 H--TRCSHLLNATQAD-EEFAVITVSGSEFGRSEVESRLNISKGKFHTLECVAS-AQGEQAYTLF 504

  Fly   287 LRVVRSL-HVLEAGVASGSLHSTSFVYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIETVH 350
            ....|:: |.|...:.||.: |||.:..|:...|::.:|         :|.|:|         :|
Zfish   505 SISERTVPHKLFTPLLSGVV-STSVLLSFILVVLLYKYM---------QKPKYE---------IH 550

  Fly   351 QWTKKVIIFKPEGGGDS-SGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNEYEFPLDSNWELPRS 414
             |  |||        || .|:..|.|.|.                       :.|.|..||.||.
Zfish   551 -W--KVI--------DSFDGNNYTYIDPT-----------------------QLPYDPKWEFPRE 581

  Fly   415 HLVLGATLGEGAFGRVVMAEVNN-------AIVAVKMVKEGHTDDDIASLVREMEVMKIIGRHIN 472
            .|..|..||.||||:||.|....       ..|||||:|......:..:|:.|::|:..||.|||
Zfish   582 RLRFGKILGSGAFGKVVAATAYGLCSADTVTTVAVKMLKPSAHSTEKEALMSELKVLSYIGNHIN 646

  Fly   473 IINLLGCCSQNGPLYVIVEYAPHGNLKDFLYKNR-PFGRDQDRDS------SQPPPS-------- 522
            |:||||.|:..||..||.||..:|:|.:||.:.| .|...:..|.      ||..||        
Zfish   647 IVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDAFFSSKTGDGYYKNLLSQTQPSIEGTDNGY 711

  Fly   523 PPAH------------------VITEKDLIKFAHQIARGMDYLASRRCIHRDLAARNVLVSDDYV 569
            .|..                  .:..:||:.|::|:|:|||:|.|:.||||||||||||::...|
Zfish   712 MPMRSYQKRSNQTEWCDDKDDLSLDTEDLLSFSYQVAKGMDFLTSKNCIHRDLAARNVLLTQGRV 776

  Fly   570 LKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFYDSKSDVWSYGILLWEIMTYGQQPY 634
            .||.||||||||.....|....|.|||:|||:||||....|..:|||||||||||||.:.|..||
Zfish   777 AKICDFGLARDITRDSNYVLRGNARLPVKWMSPESLFACVYTFESDVWSYGILLWEIFSLGNTPY 841

  Fly   635 PTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADDRPPFTEIVEYMDKLLQ--TKED 697
            |.|......|..:..|.||.:|......||.:||.||..:...||||.::||..:.||.  ||.|
Zfish   842 PGIPVGSTFYKMIQDGYRMSEPEFAPSEIYEVMRWCWSADPLKRPPFKKLVERTELLLSETTKHD 906

  Fly   698 YLDVDIANLDTPPS 711
            ||     ||.|..|
Zfish   907 YL-----NLSTSGS 915

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 19/79 (24%)
Ig strand B 121..125 CDD:409353 3/3 (100%)
Ig strand C 134..138 CDD:409353 2/5 (40%)
Ig strand E 157..161 CDD:409353 0/3 (0%)
Ig strand F 171..176 CDD:409353 2/4 (50%)
Ig strand G 184..187 CDD:409353 0/2 (0%)
Ig 200..289 CDD:472250 22/107 (21%)
Ig strand B 216..220 CDD:409353 1/3 (33%)
Ig strand C 229..233 CDD:409353 1/3 (33%)
Ig strand E 255..259 CDD:409353 0/3 (0%)
Ig strand F 269..274 CDD:409353 2/6 (33%)
Ig strand G 282..285 CDD:409353 0/2 (0%)
Protein Kinases, catalytic domain 404..692 CDD:473864 136/327 (42%)
kitbNP_001137390.2 None

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