DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and pdgfrl

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_956608.3 Gene:pdgfrl / 393284 ZFINID:ZDB-GENE-040426-901 Length:371 Species:Danio rerio


Alignment Length:190 Identity:44/190 - (23%)
Similarity:71/190 - (37%) Gaps:42/190 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IWQPAVQVEGRRQMANSQEMIKDHL--------GARSQNKTP----AITNNANQSSTSSADLDDG 82
            :..|.::|...|::. ::|:..|..        |...||.:|    |....||.:|.::..:   
Zfish   192 VTNPKIKVSLHREVP-AEEIAVDGTQISYNPTKGFIIQNPSPEHKGAYYCKANSTSKTTPQI--- 252

  Fly    83 AADDDDNKAD-LPVNVSSKPYWRNPKKMSFLQTRPSGSLLTLNCHALGNPEPNI--TWYRNG--- 141
                 ..|.. |.|.|.|.|.:...:..|  .:...|.:..:.|..||.||.|:  :|...|   
Zfish   253 -----STKYQLLYVEVPSGPPFATIEASS--NSVSGGDVFNVTCTVLGEPEMNVSFSWRYPGQDQ 310

  Fly   142 -----TVDW---TRGYGSLKR-NRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDTQVIVS 192
                 ...|   .||.|...| ::..:.::|:...|.|.|.|...|..|    :|.|..|
Zfish   311 RPVNIQDSWRLINRGVGHTTRISQSVMIVDDVETIDYGKYICTAKNKNG----ETLVATS 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 25/103 (24%)
Ig strand B 121..125 CDD:409353 0/3 (0%)
Ig strand C 134..138 CDD:409353 1/5 (20%)
Ig strand E 157..161 CDD:409353 0/3 (0%)
Ig strand F 171..176 CDD:409353 2/4 (50%)
Ig strand G 184..187 CDD:409353 0/2 (0%)
Ig 200..289 CDD:472250
Ig strand B 216..220 CDD:409353
Ig strand C 229..233 CDD:409353
Ig strand E 255..259 CDD:409353
Ig strand F 269..274 CDD:409353
Ig strand G 282..285 CDD:409353
Protein Kinases, catalytic domain 404..692 CDD:473864
pdgfrlNP_956608.3 None
Blue background indicates that the domain is not in the aligned region.

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