DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htl and flt4

DIOPT Version :9

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_571020.2 Gene:flt4 / 30121 ZFINID:ZDB-GENE-980526-326 Length:1368 Species:Danio rerio


Alignment Length:692 Identity:224/692 - (32%)
Similarity:322/692 - (46%) Gaps:152/692 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 FLQTRPSG--------------SLLTLNCHALGNPEPNITWYR---------------NGTVDWT 146
            ::.|.|.|              .|:.|.|:|......|:.|||               :....:.
Zfish   578 YVTTIPEGFDIEMEPSEDPLEQDLVQLKCNADNFTYENLRWYRLDPQTVPPELDCKSLHQYATFL 642

  Fly   147 RGYGSLK--RNRWTLTME--DLVPGDCGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPILMTGPLN 207
            .|..|.:  .|.|.|.:.  ::...|.|||.|:|.|....::|..:..:..:....|.....|.|
Zfish   643 EGQLSFQTTSNNWVLQLNITNIQLQDEGNYVCEVQNRRTGVKHCHRKYIPVKAMEAPRYRHNPTN 707

  Fly   208 LTLVVNSTGSMHCKYLSDLTSKKAWI--FVPCHGMTNCSNNRSIIAEDKDQ-LDFVNVRMEQEGW 269
            .|:.|:.:..|:|........:.:|.  ..|.|.::      .|:.:|.:: |....||.|..|.
Zfish   708 HTVNVSESLQMNCDVEGTPFPQLSWFKDNQPLHQIS------GILLQDSNRTLSIQRVREEDAGL 766

  Fly   270 YTCVESNSLGQSNSTAYLRVVRSLHVLEAGVASGSLHSTSFVYIFVFG-GLIFIFMTTLFVFYAI 333
            |||...|..|...|:|.:.|:            ||...|:...:.:.| |:|.||.         
Zfish   767 YTCSACNQKGCVQSSATVSVI------------GSDDKTNVEIVILIGTGVIAIFF--------- 810

  Fly   334 RKMKHEKVLKQRIETVHQWTKKVIIF---KPEGGGD-SSGSMDTMIMP-VVRIQKQRTTVLQNGN 393
                              |...::||   |.....| .:|.:..::.| .|.:::|         
Zfish   811 ------------------WVLLLVIFCNVKRVNPADIKTGYLSIIMDPGEVPLEEQ--------- 848

  Fly   394 EPAPFNEYEFPLDSN-WELPRSHLVLGATLGEGAFGRVVMAEV-------NNAIVAVKMVKEGHT 450
                 .|| .|.||: ||:.|..|.||..||.||||:|:.|.:       :...|||||:|||.|
Zfish   849 -----CEY-LPYDSSQWEISRDRLRLGKVLGHGAFGKVIEASIFGHDKKSSANTVAVKMLKEGAT 907

  Fly   451 DDDIASLVREMEVMKIIGRHINIINLLGCCSQ-NGPLYVIVEYAPHGNLKDFLYKNRPF---GRD 511
            ..:..:|:.|::::..||.|:|::||||.|:: ||||.|||||..:|||.:||...|.|   .||
Zfish   908 ASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEYCKYGNLSNFLRAKREFFLPYRD 972

  Fly   512 Q-----------------DRDSSQPPPS---PPAHVI--------TEKDLIKFAHQIARGMDYLA 548
            :                 .:...||..|   ||...:        |.:|||.::.|:||||::||
Zfish   973 RSPKTQSQVRRMIEAGQASQSEHQPSTSSTNPPRVTVDDLWKTPLTIEDLICYSFQVARGMEFLA 1037

  Fly   549 SRRCIHRDLAARNVLVSDDYVLKIADFGLARDI-QSTDYYRKNTNGRLPIKWMAPESLQEKFYDS 612
            ||:||||||||||:|:|::.|:||.|||||||| :..||.||. |.|||:|||||||:.:|.|.|
Zfish  1038 SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKG-NARLPLKWMAPESIFDKVYTS 1101

  Fly   613 KSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADD 677
            :|||||:|:|||||.:.|..|||.|...|:....|..|.||..|...|..||.:|..||.....:
Zfish  1102 QSDVWSFGVLLWEIFSLGASPYPGIQIDEDFCKRLKDGTRMRAPDNASPEIYGIMLACWQGEPRE 1166

  Fly   678 RPPFTEIVEYMDKLLQTKEDYLDVDIANLDTPPSTSDEEEDE 719
            ||.|..:||.:..|||  |:.|.      :.|.:.|...||:
Zfish  1167 RPTFPALVEILGDLLQ--ENSLP------EIPFNVSQSSEDD 1200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 112..191 CDD:299845 24/111 (22%)
IG_like 113..191 CDD:214653 24/110 (22%)
IG_like 205..289 CDD:214653 23/86 (27%)
PKc_like 404..692 CDD:304357 147/328 (45%)
STYKc 416..688 CDD:214568 141/311 (45%)
flt4NP_571020.2 IG_like 258..348 CDD:214653
Ig1_VEGFR 265..350 CDD:143270
IG_like 362..445 CDD:214653
Ig 373..445 CDD:299845
Ig 602..685 CDD:143165 19/82 (23%)
IG 602..678 CDD:214652 18/75 (24%)
I-set 705..786 CDD:254352 23/86 (27%)
IGc2 714..776 CDD:197706 16/67 (24%)
PKc_like 858..1184 CDD:304357 147/328 (45%)
Pkinase_Tyr 866..1177 CDD:285015 141/311 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 978..1007 5/28 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1190..1212 4/11 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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