DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and Srms

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001011961.1 Gene:Srms / 296472 RGDID:1306602 Length:507 Species:Rattus norvegicus


Alignment Length:345 Identity:126/345 - (36%)
Similarity:180/345 - (52%) Gaps:42/345 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 IIFKPEGG-----GDSSGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNE---YEFPL-DSNWELP 412
            |...|.||     |....|:|.::    ...|....::||     |..:   .:.|| ...||.|
  Rat   186 ICMAPSGGLYLQEGRLFPSLDALL----AYYKTNWKLIQN-----PLLQPCVPQMPLAQDEWERP 241

  Fly   413 RSHLVLGATLGEGAFGRVVMA-EVNNAIVAVKMVKEGHTDDDIASLVREMEVMKIIGRHINIINL 476
            ||..||...||||.||.|... .:.:..||||::|.  .|..:|.|.:|:|.:|.: ||..:|.|
  Rat   242 RSEFVLRRKLGEGFFGEVWEGLWLGSTPVAVKVIKS--ADMKLADLTKEIEALKSL-RHERLIRL 303

  Fly   477 LGCCSQNGPLYVIVEYAPHGNLKDFLYKNRPFGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIA 541
            ...||...|:|::.|....|||:.:|                  .||....::...|:.||.|:|
  Rat   304 HAICSLGEPVYIVTELMGKGNLQVYL------------------GSPEGKALSLPHLLGFACQVA 350

  Fly   542 RGMDYLASRRCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQ 606
            .||.||..||.:|||||||||||.||...|:||||||| :...|.|..::..::|:||.|||:..
  Rat   351 EGMSYLEERRVVHRDLAARNVLVGDDLTCKVADFGLAR-LLKDDVYSPSSGSKIPVKWTAPEAAN 414

  Fly   607 EKFYDSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCW 671
            .:.:..||||||:||||:|:.||||.||.. |:..|....:..|.|:.:||.|...:|:||.:||
  Rat   415 YRVFSQKSDVWSFGILLYEVFTYGQCPYEG-MTNHETLQQISRGYRLPRPAVCPAEVYMLMVECW 478

  Fly   672 HFNADDRPPFTEIVEYMDKL 691
            ..:.::||.|..:.|.::.:
  Rat   479 KGSPEERPTFATLREKLNAI 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250
Ig strand B 121..125 CDD:409353
Ig strand C 134..138 CDD:409353
Ig strand E 157..161 CDD:409353
Ig strand F 171..176 CDD:409353
Ig strand G 184..187 CDD:409353
Ig 200..289 CDD:472250
Ig strand B 216..220 CDD:409353
Ig strand C 229..233 CDD:409353
Ig strand E 255..259 CDD:409353
Ig strand F 269..274 CDD:409353
Ig strand G 282..285 CDD:409353
Protein Kinases, catalytic domain 404..692 CDD:473864 115/290 (40%)
SrmsNP_001011961.1 SH3 70..124 CDD:473055
SH2 134..212 CDD:472789 7/29 (24%)
PTKc_Srm_Brk 238..498 CDD:133248 113/282 (40%)
Blue background indicates that the domain is not in the aligned region.

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