DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and Srms

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_035611.4 Gene:Srms / 20811 MGIID:101865 Length:496 Species:Mus musculus


Alignment Length:539 Identity:154/539 - (28%)
Similarity:232/539 - (43%) Gaps:134/539 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 NYTCKVCNSLGCIRHDT--------QVIVSDRVNHKPILMTGPLNLTLVVNSTGSMHCKYLSDLT 227
            ::|.:....|...|.|.        ..|.:.|::..|              |||.:...||:..|
Mouse    65 DFTARCAEELSVSRGDRLYALKEEGDYIFAQRLSGPP--------------STGLVPVTYLAKAT 115

  Fly   228 ----SKKAWIFVPCHGMTNCSNNRSIIAEDKDQLDFVNVRMEQEGWYTCVESNSLGQSNSTAYLR 288
                |.:.|.|   .|::.....:.:::.......|: :|..:         :|:|     .|..
Mouse   116 PEPPSDQPWYF---SGISRAQAQQLLLSPANAPGAFL-IRPSE---------SSIG-----GYSL 162

  Fly   289 VVRS----LHVLEAGVASGSLHSTSFVYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIETV 349
            .||:    .|.......||||        ::..|.:|..:..|..:|..                
Mouse   163 SVRAQAKVCHYRICMAPSGSL--------YLQEGQLFPSLDALLAYYKT---------------- 203

  Fly   350 HQWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNEYEFPL-DSNWELPR 413
             .|  |:|             .:.::.|.:.                     :.|| ...||.||
Mouse   204 -NW--KLI-------------QNPLLQPCIP---------------------QIPLVQDEWERPR 231

  Fly   414 SHLVLGATLGEGAFGRVVMAEVNNAI-VAVKMVKEGHTDDDIASLVREMEVMKIIGRHINIINLL 477
            |..||...||||.||.|.......:| ||||::|.  .|..:|.|.:|:|.:|.: ||..:|.|.
Mouse   232 SEFVLRRKLGEGFFGEVWEGLWLGSIPVAVKVIKS--ADMKLADLTKEIEALKSL-RHERLIRLH 293

  Fly   478 GCCSQNGPLYVIVEYAPHGNLKDFLYKNRPFGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIAR 542
            ..||...|:|::.|....|||:.:|      |..:.:..|.|            .|:.||.|:|.
Mouse   294 AICSLGEPVYIVTELMGKGNLQVYL------GSSEGKALSLP------------HLLGFACQVAE 340

  Fly   543 GMDYLASRRCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQE 607
            ||.||..||.:|||||||||||.||...|:||||||| :...|.|..::..::|:||.|||:...
Mouse   341 GMSYLEERRVVHRDLAARNVLVGDDLTCKVADFGLAR-LLKDDVYSPSSGSKIPVKWTAPEAANY 404

  Fly   608 KFYDSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWH 672
            :.:..||||||:||||:|:.||||.||.. |:..|....:..|.|:.:||.|...:|:||.:||.
Mouse   405 RVFSQKSDVWSFGILLYEVFTYGQCPYEG-MTNHETLQQISRGYRLPRPAVCPAEVYVLMVECWK 468

  Fly   673 FNADDRPPFTEIVEYMDKL 691
            .:.::||.|..:.|.::.:
Mouse   469 GSPEERPTFAILREKLNAI 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 4/27 (15%)
Ig strand B 121..125 CDD:409353
Ig strand C 134..138 CDD:409353
Ig strand E 157..161 CDD:409353
Ig strand F 171..176 CDD:409353 1/4 (25%)
Ig strand G 184..187 CDD:409353 1/2 (50%)
Ig 200..289 CDD:472250 15/92 (16%)
Ig strand B 216..220 CDD:409353 1/3 (33%)
Ig strand C 229..233 CDD:409353 0/3 (0%)
Ig strand E 255..259 CDD:409353 0/3 (0%)
Ig strand F 269..274 CDD:409353 0/4 (0%)
Ig strand G 282..285 CDD:409353 0/2 (0%)
Protein Kinases, catalytic domain 404..692 CDD:473864 117/290 (40%)
SrmsNP_035611.4 None
Blue background indicates that the domain is not in the aligned region.

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